Gene Pmen_0315 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0315 
Symbol 
ID5110285 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp322382 
End bp323506 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content67% 
IMG OID640501532 
ProductABC-2 type transporter 
Protein accessionYP_001185821 
Protein GI146305356 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGAGCC TGGGCAACAT CTTCCACCTC GGCATCAAGG AGCTGCGCAG CCTGCAGCAC 
GACCTGGCGC TGGTGCTGCT GATTCTCTGG GCCTTCAGCA TGGGCGTGTA CTCGGCCGCC
ACCAGCATCC CGGAGAGCCT GCACAACGCG GCCATCGCGG TAGTCGACGA GGACCAGTCG
CAGCTCTCCG AACGCCTGAT CCAGGCCTTT CAGCCGCCCT ATTTCCGCAC GCCCGAGCGC
ATCGACCTGA GCCAGATGGA TCAGGGCATG GATTCCGGGC GCTACACCTT CACCCTGAAC
ATTCCGCCGA ACTACCAGCG CGACGTGCTG GCCGGCCGCA GCCCGGCGAT TCAGCTCAAC
GTCGATGCTA CTCAGGTGAG CATGGCCTTC ACCGGCGCCG GCTATATCCA GAACATCGGC
GCCAGCGAGG TGGCCGAGTT CGTCCGCCGC TACCGCGGCG AGGCGCAACA GCCGGCCGAA
CTGGTCGTGC GGGTGGCGTT CAATCCCAAC CTGACCCGCG CCTGGTTCGG CTCGGTGATG
GAGGTGATCA ACCAGATCAC CATGCTGTCG ATCATCCTCA CCGGCGCGGC GCTGATCCGC
GAGCGCGAAC ACGGCACGGT GGAGCACCTG CTGGTGATGC CGGTGACGCC GCTGCAGATC
ATGCTGGCCA AGGTCTGGTC CATGGGCCTG GTGGTGCTGA CGGCCGCCGC GCTGTCGCTG
CTGCTGGTGG TACAGGGCTG GCTGCAGGTA CCGATCGAGG GTTCGCTGGC GCTGTTTCTG
GCGGGCGCGG CGCTGCACCT GTTCGCCACC ACTTCGATGG GCATCTTCTT CGGCACCGTG
GCGCGCTCGA TGCCGCAGCT GGGCCTGCTG ATCATCCTGG TGCTGCTGCC GCTGCAGATT
CTCTCCGGCG GCACCACGCC GCGCGAGAGC ATGCCGGAGC TGGTGCAGCA GATCATGCTG
GCGGCGCCGA CCACCCACTT CGTCGACCTG GCCCAGGCCA TTCTCTACCG CGGCGCCGGG
CTGGCCATCG TCTGGCCGCA ACTGCTGACC ATCGCCGTGA TCGGCACGCT GTTCTTCCTC
GCCGCGCTGG CGCGCTTTCG CAAGACCCTG GCGCAGATGG CGTAG
 
Protein sequence
MESLGNIFHL GIKELRSLQH DLALVLLILW AFSMGVYSAA TSIPESLHNA AIAVVDEDQS 
QLSERLIQAF QPPYFRTPER IDLSQMDQGM DSGRYTFTLN IPPNYQRDVL AGRSPAIQLN
VDATQVSMAF TGAGYIQNIG ASEVAEFVRR YRGEAQQPAE LVVRVAFNPN LTRAWFGSVM
EVINQITMLS IILTGAALIR EREHGTVEHL LVMPVTPLQI MLAKVWSMGL VVLTAAALSL
LLVVQGWLQV PIEGSLALFL AGAALHLFAT TSMGIFFGTV ARSMPQLGLL IILVLLPLQI
LSGGTTPRES MPELVQQIML AAPTTHFVDL AQAILYRGAG LAIVWPQLLT IAVIGTLFFL
AALARFRKTL AQMA