| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0305 |
|---|
| Symbol | |
|---|
| ID | 5110275 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 313075 |
|---|
| End bp | 313740 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640501522 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001185811 |
|---|
| Protein GI | 146305346 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTACC AGTTCGACTT CGTCGCCGTC CTGCAGCACA GCGATCTGCT GCTGCAGGGC
GCGGCCTTCA CCCTCGGCCT GACGGCGATC GGCACCCTGC TGGGCGTCGC TCTCGGCATC
GTCGGGGCGA TACTGCGCGC CTGGCGCATC CGCCCGTTCG ACCGCATCTT CGGCGTCTAT
GTGGAGCTGA TCCGCAACAC GCCTTTCATC GTCCAGCTGT TCTTCATCTT CTTCGGCCTG
CCCTCGCTCG GCGTGCGCCT GAGCGAGTGG GAGGCCGCGG TGCTGGCCAT GGTGATCAAC
CTCGGCGCCT ACTCCACGGA AATCATCCGC GCCGGCATTC AGGCCATCCC CCATGGCCAG
CTCGAGGCCG CGGCGGCACT GGCCATGAGC CGCTTCGAGA CCTTCCGCCA TGTGGTGCTG
CGCCCGGCCC TGGGCAAGGT GTGGCCGGCA CTGTCGAGCC AGATCATCAT CGTCATGCTG
GGCTCGGCGG TGTGCTCGCA AATCTCCACC GAGGAGCTGT CGTTCGCCGC CAACTTCATC
CAGTCGCGCA ACTTCCGCGC CTTCGAGACC TACCTGCTGA CCACCGCGCT GTACCTGCTC
ATGGCCATCC TGATTCGCCA GCTGCTGGCC TGGGTCGGTC GCCGCTTCAT CATGGGAGAG
CGCTGA
|
|---|
| Protein sequence | MAYQFDFVAV LQHSDLLLQG AAFTLGLTAI GTLLGVALGI VGAILRAWRI RPFDRIFGVY
VELIRNTPFI VQLFFIFFGL PSLGVRLSEW EAAVLAMVIN LGAYSTEIIR AGIQAIPHGQ
LEAAAALAMS RFETFRHVVL RPALGKVWPA LSSQIIIVML GSAVCSQIST EELSFAANFI
QSRNFRAFET YLLTTALYLL MAILIRQLLA WVGRRFIMGE R
|
|---|
| |