| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0297 |
|---|
| Symbol | |
|---|
| ID | 5110267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 304209 |
|---|
| End bp | 305501 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640501514 |
|---|
| Product | sterol desaturase-like protein |
|---|
| Protein accession | YP_001185803 |
|---|
| Protein GI | 146305338 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG3000] Sterol desaturase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAACA GACTAGCCCC AAGACAAGCA CAACGATACG GCTCGGCCAT GAATTACGTT
CTCTATGCGG TGCCTTTCTT CTTCCTGCTG ATCGCCCTCG AACTGCTCGC CGATCGCCTG
CGCGGCATGC GCAGCTATCG CCTCGCCGAT GCCCTGGGCA GCCTCGGCAC CGGCGTGCTG
TCGCAGACCA CGGGCGTGCT GACCAAGGTG GTCGGCCTGC TCACCTACGC CTTCGCCTGG
GAGCATCTGG CGCTGTTCGA ACTCGCCGAA GGCAGCCTCT GGGTCTGGGT TTTCGCCTTC
GTCTTCTATG ACTTCTGCTA CTACTGGAAC CACCGCCTGG GCCATGAACG CAATGTGCTC
TGGGCCGCTC ACGCGGTGCA TCACCAGAGC GAGGACTACA ACCTCACCAC GGCGTTGCGC
CAGACCAGCA CCGGCTTCGT CTTCGGCTGG ATCTTCTACC TGCCGATGGC CGTGCTCGGT
GTGCCGCCGC TGGTGTTTCT CACGGTGGCG GCGCTCAACC TGCTTTACCA GTTCTGGGTG
CACACCCGCC ATATCCCCAA GCTGGGCTGG TTCGAATGGC TGTTCATCAC CCCGTCCAAC
CACCGCGTGC ATCACGCACA GAACCCTATT TACATGGATC GCAATTACGG CGGGGTGTTC
ATTGTATGGG ACCGGCTTTT TGGCACCTTC CAGGAGGAGC TGGACGAGGA GCCGGTGATC
TTCGGCGTGA CCGTGCCGCT GGCCAGCTGG AATCCGCTGT GGGCCAATCT GCAGGTCTAT
GCCGGCCTGT GGCACGACGC CCGGCGCGCC GGCTCCTGGT GGGACAGGTT GCGCATCTGG
TTCATGCCCA CCGGCTGGCG CCCGGCCGAC GTGGCCGCGC GCCATCCGCA GGCCAAGCCT
GACCTGAGCA ACTTCCGCAA GTTCGAGGTG GCGCTGGGCC GTGGCGCGCA GGTCTACGCA
CTGCTGCAGT TCGTCTGCTA CCTGCTGGCC GGCGTGTGGC TGCTGGCGCA GGGCGATGCG
CTGGCCACTG GCGCGGTGCT GCTGGCCTGC CTGTGGATGG CCCTGGGCCT GTGCAGTATC
GGCCTGTGGC TGGAGAATCG CAGCCATGCC TGGCAACTGG AGTGCCTGCG CCTGGCAGGC
AACCTGCCGG CATTCTGGCT GGCCGGTGAG CTGGGCATGC TGACGCTGGA CCTCACGGTC
TGGGTCTGGC TGAGCGCCTA CAGTCTGAGC AGCCTGCTCG GTATCTGGCT GGCGCGCGGT
TCAGCCGCGC CGGCGCTGAC GCCACCGGTG TAG
|
|---|
| Protein sequence | MNNRLAPRQA QRYGSAMNYV LYAVPFFFLL IALELLADRL RGMRSYRLAD ALGSLGTGVL
SQTTGVLTKV VGLLTYAFAW EHLALFELAE GSLWVWVFAF VFYDFCYYWN HRLGHERNVL
WAAHAVHHQS EDYNLTTALR QTSTGFVFGW IFYLPMAVLG VPPLVFLTVA ALNLLYQFWV
HTRHIPKLGW FEWLFITPSN HRVHHAQNPI YMDRNYGGVF IVWDRLFGTF QEELDEEPVI
FGVTVPLASW NPLWANLQVY AGLWHDARRA GSWWDRLRIW FMPTGWRPAD VAARHPQAKP
DLSNFRKFEV ALGRGAQVYA LLQFVCYLLA GVWLLAQGDA LATGAVLLAC LWMALGLCSI
GLWLENRSHA WQLECLRLAG NLPAFWLAGE LGMLTLDLTV WVWLSAYSLS SLLGIWLARG
SAAPALTPPV
|
|---|
| |