Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0268 |
Symbol | |
ID | 5106235 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 277945 |
End bp | 278982 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640501485 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001185774 |
Protein GI | 146305309 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACAATC CCGCGACGCT GGCCGGTTCG GTCTCGGTGG CTTACCTGCA GGGCCTGGTC GATCACCTGC AGCGCCAGGG CGTAGCCCCT GCGGCGCTGC TCGCTCACGC CCAGTTGACA CCGGACGTAC TGACCCAGCG TGACCAGCGT ATCGCCGCCA GCGCCTACCT GACGCTGCTC GGCGAAGCGG TGCGCTACAG CGCGGACGAC TGTCTCGGGC TGCATCTGGG CGAGTCGGTG CGCCCTGGCT ACTACGGCGT GCTCGGCTAC CTGATCATGA GTTGCGCGAC GCTGGCCGAT GCACTGCACC GGCAGGCGCG CTATGCCTCG CTGGTGGGTA ATCTGGGCCT GGTCGGGCTC GACGACGAAC CGCCGCGCCC GGGGTGCGAG GCGCAGGTGG CGCACACCTG GCAACCCCTG CTGGCGCAGC AGCAGCGCCA GCTGAGCGAG GAGACGCTGG CCGGCTGGGT CAGCTTCGGG CGCTGGATCA GCGGGCTGGA CATCGCGCCG ACCGAGGTGC GTTTTCAGCA TTCGGCGCCG GCCGATACCT CCGAGCACGC GCGCATCTTT CGCTGTCCGG TGCTGTTCGA TCAGGCCGAC AACGCCCTGG TGTTTCCCAA GCGTCTGCTG GCCGCGCCGC TGGGGCAGGC CGATGCCCAG GTGCGCCGCA TGCTCGACGC CTATGCCGAA CGCCTGCTCG CCGAGCTGAA CCAGGGCCAC AGCGTGCTCG ACCGGGCGCG CCTGGAGCTG GCGCGACAAC TGCCCGAGCA GGGACCGGAT CTGGAGACGA TCGCCAGCGC CCTGGCGCTA AGCCCGCGCA CCCTGCAGCG GCGTCTGCGC GAGGCGGGGC TGTCGTTCAG CCAGCTGGTG GACGAAACCC GCCAGCAACT GGTGCTGCAC TACCTGCGCG ACCCGGCGCT GGAGCTGGCC GAAATCGCCT TTCTGGTCGG TTTCAGCGAG CCAGGTTCGC TGGTGCGGGC GTTTCGTCGC TGGACGGGAG GGAGCCCGGG CGAGTACCGT CGCCACCTTC TTGGCTAG
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Protein sequence | MDNPATLAGS VSVAYLQGLV DHLQRQGVAP AALLAHAQLT PDVLTQRDQR IAASAYLTLL GEAVRYSADD CLGLHLGESV RPGYYGVLGY LIMSCATLAD ALHRQARYAS LVGNLGLVGL DDEPPRPGCE AQVAHTWQPL LAQQQRQLSE ETLAGWVSFG RWISGLDIAP TEVRFQHSAP ADTSEHARIF RCPVLFDQAD NALVFPKRLL AAPLGQADAQ VRRMLDAYAE RLLAELNQGH SVLDRARLEL ARQLPEQGPD LETIASALAL SPRTLQRRLR EAGLSFSQLV DETRQQLVLH YLRDPALELA EIAFLVGFSE PGSLVRAFRR WTGGSPGEYR RHLLG
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