Gene Pmen_0268 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0268 
Symbol 
ID5106235 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp277945 
End bp278982 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content70% 
IMG OID640501485 
ProductAraC family transcriptional regulator 
Protein accessionYP_001185774 
Protein GI146305309 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACAATC CCGCGACGCT GGCCGGTTCG GTCTCGGTGG CTTACCTGCA GGGCCTGGTC 
GATCACCTGC AGCGCCAGGG CGTAGCCCCT GCGGCGCTGC TCGCTCACGC CCAGTTGACA
CCGGACGTAC TGACCCAGCG TGACCAGCGT ATCGCCGCCA GCGCCTACCT GACGCTGCTC
GGCGAAGCGG TGCGCTACAG CGCGGACGAC TGTCTCGGGC TGCATCTGGG CGAGTCGGTG
CGCCCTGGCT ACTACGGCGT GCTCGGCTAC CTGATCATGA GTTGCGCGAC GCTGGCCGAT
GCACTGCACC GGCAGGCGCG CTATGCCTCG CTGGTGGGTA ATCTGGGCCT GGTCGGGCTC
GACGACGAAC CGCCGCGCCC GGGGTGCGAG GCGCAGGTGG CGCACACCTG GCAACCCCTG
CTGGCGCAGC AGCAGCGCCA GCTGAGCGAG GAGACGCTGG CCGGCTGGGT CAGCTTCGGG
CGCTGGATCA GCGGGCTGGA CATCGCGCCG ACCGAGGTGC GTTTTCAGCA TTCGGCGCCG
GCCGATACCT CCGAGCACGC GCGCATCTTT CGCTGTCCGG TGCTGTTCGA TCAGGCCGAC
AACGCCCTGG TGTTTCCCAA GCGTCTGCTG GCCGCGCCGC TGGGGCAGGC CGATGCCCAG
GTGCGCCGCA TGCTCGACGC CTATGCCGAA CGCCTGCTCG CCGAGCTGAA CCAGGGCCAC
AGCGTGCTCG ACCGGGCGCG CCTGGAGCTG GCGCGACAAC TGCCCGAGCA GGGACCGGAT
CTGGAGACGA TCGCCAGCGC CCTGGCGCTA AGCCCGCGCA CCCTGCAGCG GCGTCTGCGC
GAGGCGGGGC TGTCGTTCAG CCAGCTGGTG GACGAAACCC GCCAGCAACT GGTGCTGCAC
TACCTGCGCG ACCCGGCGCT GGAGCTGGCC GAAATCGCCT TTCTGGTCGG TTTCAGCGAG
CCAGGTTCGC TGGTGCGGGC GTTTCGTCGC TGGACGGGAG GGAGCCCGGG CGAGTACCGT
CGCCACCTTC TTGGCTAG
 
Protein sequence
MDNPATLAGS VSVAYLQGLV DHLQRQGVAP AALLAHAQLT PDVLTQRDQR IAASAYLTLL 
GEAVRYSADD CLGLHLGESV RPGYYGVLGY LIMSCATLAD ALHRQARYAS LVGNLGLVGL
DDEPPRPGCE AQVAHTWQPL LAQQQRQLSE ETLAGWVSFG RWISGLDIAP TEVRFQHSAP
ADTSEHARIF RCPVLFDQAD NALVFPKRLL AAPLGQADAQ VRRMLDAYAE RLLAELNQGH
SVLDRARLEL ARQLPEQGPD LETIASALAL SPRTLQRRLR EAGLSFSQLV DETRQQLVLH
YLRDPALELA EIAFLVGFSE PGSLVRAFRR WTGGSPGEYR RHLLG