| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0266 |
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| Symbol | dapF |
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| ID | 5106233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 275540 |
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| End bp | 276370 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640501483 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001185772 |
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| Protein GI | 146305307 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTATTGC GCTTTACCAA GATGCACGGC CTGGGCAATG ACTTCATGGT CCTCGACCTG
ATCAGTCAGC ATGCCCACGT GCAACCCAAA CATGCCAAGC AGTGGGGCGA CCGTCACACC
GGCGTCGGCT TCGATCAGTT GCTGATCGTC GAACCGCCGA GCCACCCGGA CGTCGACTTC
CGCTACCGCA TCTTCAACTC CGACGGCTCC GAGGTGGAGC AGTGCGGCAA CGGCGCGCGC
TGCTTCGCCC GCTTCGTGCT GGACAAGCGC CTGACCACCA AGAAGACCAT TCGCGTCGAG
ACCAAGAGCG GCGTGATCGA ACTGCGCGTG CAGAACGACG GCCAGGTCTG CGTCAACATG
GGCGCACCGC GTCTGGAGCC GGCGCAGGTG CCGTTCCAGG CCGAGCAGGC GGCGCTGACC
TATCGCGTCG ACGTCGAAGG TCAGAGCGTC GAGCTGGCTG CGCTGTCGAT GGGCAACCCG
CATGCCGTGC TGCGCGTCGA CAACGTCGAC AGCGCCCCGG TGCACACCCT CGGACCGAAG
CTGGAACATC ACCCGCGCTT TCCGCAGCGG GTCAACGTCG GCTTCCTGCA GGTGCTGGAC
CGCAAGCATG CGCGCCTGCG CGTGTGGGAG CGCGGCGCCG GCGAAACCCA GGCCTGCGGC
ACCGGCGCCT GCGCCGCCGC GGTCGCGGCG ATTCGCCAGG GCTGGATGGA TTCGCCCGTG
CAACTGGAAC TGCCAGGCGG CAAACTGTCC ATCGAATGGG CAGGCGAAGG TCAGCCGGTT
ATGATGACCG GGCCCGCTGC CCGCGTATAC GAAGGACAGG TTCGCCTATG A
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| Protein sequence | MLLRFTKMHG LGNDFMVLDL ISQHAHVQPK HAKQWGDRHT GVGFDQLLIV EPPSHPDVDF
RYRIFNSDGS EVEQCGNGAR CFARFVLDKR LTTKKTIRVE TKSGVIELRV QNDGQVCVNM
GAPRLEPAQV PFQAEQAALT YRVDVEGQSV ELAALSMGNP HAVLRVDNVD SAPVHTLGPK
LEHHPRFPQR VNVGFLQVLD RKHARLRVWE RGAGETQACG TGACAAAVAA IRQGWMDSPV
QLELPGGKLS IEWAGEGQPV MMTGPAARVY EGQVRL
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