| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0254 |
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| Symbol | |
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| ID | 5106221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 263771 |
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| End bp | 265444 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640501471 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001185760 |
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| Protein GI | 146305295 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCCACGC TCGTCGAACC CTTGCGGTTA GTCCTGCTGG CGGATACGTC CGATTGGGCC
GAATTGTTGC GCGAGCAACT CAGCGCCCTG GGCAGCCCAT CTCCGCTGAT CACGGCGCCG
TCCTGGGCGG CTGCCAGCAC GCTGTTCGAC GACCACGCCA GCGGCTTGTT GCTGACCACC
GCCGATCGCC TTCCCGACCC CCATCAATGC CCCCTGCCCA TCGTCCTGCT GCTCGACGAG
GAACCCGTCG AAGAGCCCAG CGGCGTCAGC GACTGGCTGG TGCGCGGCAG CCTCAACCTC
GACGTGCTGC GCCGCTGCCT GCGCTACGTG CGCGAGCAGG GCAATCTGCG CCAGACCCTG
CAGCGCCTGG CCGAGCAGGA CCCGCTGACC GGCATCGCCA ACCGTCAGGG TTTCCAGACC
CTGCTCGCCG CGCGCCTGGC CGAATGCAAC GGTCGCGGCC TGGTGCTCGG CCATCTCGAT
CTGGACAACT TCCGCCACGC CAACGACGCC CTCGGCTATC AGGCCGGTGA TCGCCTGATC
CTGCAGGTGG TGGCGCGCCT GAAGAGCCTG CTGCAGCCCT GCGATCAGAT CGCCCGCCTG
GGCAGCGACG AATTCGCCCT GCTGCTCGAT GTGCGCCGCG ATCCGCTGCG GGTCGAGAGC
CTGGCCGAGC GCATCACCGA GGTGCTGGCC GAGCCCTACT GGGTCGATGG CGAGAGCCTG
CTGATCGGTT GCAGCCTGGG CCTGGCCCAT GCCCGTGCGG GCGAGGGGGC CGATCCCTTG
CTGTGGCACG CACACATCGC CATGCAGCAG GCCAAGAGTC AGCAGGGCTG CGTGTTCCAT
GTCTACGACG AGCGCCTCAA CCGCAGTGCG CGCAGCCAGG CCGATCTGGA AGGCGAGCTG
CGCCGCGCCC TGCGCCGTGA CGAACTGGAA CTGCATTATC AGCCGCGCCT GTGCCTGCAG
AGCGGGCGCA TCGTCGGCCT GGAGGCGCTG GTGCGCTGGC AGCACGGCGA GCGAGGCCTG
CTCTCGCCCA ACGAATTCGT GCCGCTGGCC GAGGAAACCG GGCTGATCGT GCCGCTCGGC
TACTGGGTCA TCTCCCGCGC CCTGCGCGAC ATGCAGTGGC TGCGCGGGCG CGGCCTGCCG
GCCCTGCACA TGGCGATCAA CCTGTCGTTC CGCCAGTTCC AGGACAGCCA GCTGCTGCCG
ACCCTCAGCC GCCTGATCGA GGAGCGCGGG GTGGATGCGC AATGGCTGGA GTTCGAACTG
ACCGAGACCG CGGTGATGCG GCGCAGCGAT CAGGTGCAGC AGACCATGCT GGCCCTGGGG
CGGCTCGGCG TGCGTTTCTC GCTGGACGAC TTCGGCACCG GCTTCTCTTC CTTCGTCCAT
CTCAACAGCC TGCCCATCAC CCTGCTGAAG ATCGACCGCA GTTTCGTCGG CGGCATGGGC
GCGCGTGCCG AGAATCGCCA GCTGGTGCGG GCGATGATCA ACCTGGCGCA CAACCTCAAT
CTGGAAGTGG TGGCCGAAGG GGTGGAAAAC ATCGAGCAAC TGGACATGCT GCGCCAGTTC
GGTTGCGATC AGGTCCAGGG CTACCTGATC AGCAAGGCCG TACCGCTGGC CGAGCTGGCG
CGTTTCCTGG TGTTCGGTCA GCGCCAGCCG CTGCTGGCGG TAACGCCGTC CTGA
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| Protein sequence | MSTLVEPLRL VLLADTSDWA ELLREQLSAL GSPSPLITAP SWAAASTLFD DHASGLLLTT
ADRLPDPHQC PLPIVLLLDE EPVEEPSGVS DWLVRGSLNL DVLRRCLRYV REQGNLRQTL
QRLAEQDPLT GIANRQGFQT LLAARLAECN GRGLVLGHLD LDNFRHANDA LGYQAGDRLI
LQVVARLKSL LQPCDQIARL GSDEFALLLD VRRDPLRVES LAERITEVLA EPYWVDGESL
LIGCSLGLAH ARAGEGADPL LWHAHIAMQQ AKSQQGCVFH VYDERLNRSA RSQADLEGEL
RRALRRDELE LHYQPRLCLQ SGRIVGLEAL VRWQHGERGL LSPNEFVPLA EETGLIVPLG
YWVISRALRD MQWLRGRGLP ALHMAINLSF RQFQDSQLLP TLSRLIEERG VDAQWLEFEL
TETAVMRRSD QVQQTMLALG RLGVRFSLDD FGTGFSSFVH LNSLPITLLK IDRSFVGGMG
ARAENRQLVR AMINLAHNLN LEVVAEGVEN IEQLDMLRQF GCDQVQGYLI SKAVPLAELA
RFLVFGQRQP LLAVTPS
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