| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0232 |
|---|
| Symbol | |
|---|
| ID | 5106199 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 239295 |
|---|
| End bp | 240617 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640501449 |
|---|
| Product | 4-aminobutyrate aminotransferase |
|---|
| Protein accession | YP_001185738 |
|---|
| Protein GI | 146305273 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
|---|
| TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 66 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAACC GACCACTCGC CGGGGACGGC CATGAGGACA CCATGAGCAA GACCAACGAA
TCCCTGCTGC AACGCCGTGC CGCCGCCGTA CCGCGCGGTG TCGGCCAGAT CCACCCGATC
GTCGCCGAGC GCGCCGAGAA CGCCACCGTG TGGGACGTCG AAGGCCGCGA GTACATCGAC
TTCGCCGGCG GCATCGCCGT GCTGAACACC GGCCACCTGC ATCCGAAGGT GGTCGCCGCC
GTTCAGGAGC AGTTGACCAA GCTGTCGCAC ACCTGCTTCC AGGTGCTGGC CTACGAGCCC
TACATCGAGC TGTGCGAAGA GATCGCCAAG CGCGTGCCGG GCAACTTCGC CAAGAAGACC
CTGCTGGTCA CCTCCGGCTC CGAAGCCGTC GAGAACGCCG TGAAGATCGC CCGCGCCGCC
ACTGGCCGCG CCGGCGTGAT CGCCTTCACC GGCGCCTACC ACGGCCGCAC CATGATGACC
CTGTCGCTGA CCGGCAAGGT GGTACCGTAC TCCGCCGGCA TGGGCCTGAT GCCCGCTGGC
GTGTACCGCG CCCAGGCACC GTGCCCGCTG CATGGCGTGA GCGAGGACGA GTCCATCGCC
AGCATCGAGC GCATCTTCAA GAACGACGCG CAGCCGCAGG ACATCGCCGC GATCATCATC
GAGCCGGTGC AGGGCGAGGG CGGTTTCTAC GTCAACTCCC CGGCCTTCAT GCAGCGCCTG
CGCGCGCTGT GCGACCAGCA CGGCATCCTC CTGATCGCTG ACGAAGTGCA GACCGGCGCG
GGCCGTACCG GCACCTTCTT CGCCACCGAG CAACTGGGCG TGGTGCCGGA CCTGACCACC
TTCGCCAAGT CCGTCGGCGG CGGCTTCCCG ATCTCCGGCG TGTGCGGCAA GGCCGAGATC
ATGGACAAGA TCGCCCCCGG TGGCCTGGGC GGCACCTACG CCGGCAGCCC GATCGCCTGC
GCCGCGGCCC TGGCCGTGCT CAAGGTGTTC GACGAGGAGA AACTGCTGGA GCGCAGCCAG
GCCGTGGGCG AGAAGCTCAA GGCCGGCCTC AAGACCATCG CCGAGAAGCA CAAGGTGATC
GGTGACGTAC GTGGCCTGGG TTCGATGGTC GCCATCGAGC TGTTCGAAGG CGGCGACCAC
AGCAAGCCGG CGGCCGAGCT GGTGGGCAAG ATCGTCGCCC GTGCGCGCGA GAAGGGCCTG
ATCCTGCTGT CGTGCGGCAC CTACTACAAC GTCATCCGCT TCCTGATGCC CGTCACCATC
CCGGACGCGC AACTGGAAAA AGGCATCGCC ATCGTCGCCG AGTGCTTCGA CGAGCTGGCC
TGA
|
|---|
| Protein sequence | MLNRPLAGDG HEDTMSKTNE SLLQRRAAAV PRGVGQIHPI VAERAENATV WDVEGREYID
FAGGIAVLNT GHLHPKVVAA VQEQLTKLSH TCFQVLAYEP YIELCEEIAK RVPGNFAKKT
LLVTSGSEAV ENAVKIARAA TGRAGVIAFT GAYHGRTMMT LSLTGKVVPY SAGMGLMPAG
VYRAQAPCPL HGVSEDESIA SIERIFKNDA QPQDIAAIII EPVQGEGGFY VNSPAFMQRL
RALCDQHGIL LIADEVQTGA GRTGTFFATE QLGVVPDLTT FAKSVGGGFP ISGVCGKAEI
MDKIAPGGLG GTYAGSPIAC AAALAVLKVF DEEKLLERSQ AVGEKLKAGL KTIAEKHKVI
GDVRGLGSMV AIELFEGGDH SKPAAELVGK IVARAREKGL ILLSCGTYYN VIRFLMPVTI
PDAQLEKGIA IVAECFDELA
|
|---|
| |