| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0225 |
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| Symbol | |
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| ID | 5106192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 230370 |
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| End bp | 231347 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640501441 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001185731 |
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| Protein GI | 146305266 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 66 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACCAAG CCATCGAAAC CGACAGCGCG GTCTACAAGA CCCTGCTCGA ATCGACCCGG
GCGATCCCCT GGAAGATCGA CTGGAAGACC ATGACCTTCG CCTACATCGG CCCGCAGATC
GAGACGCTGC TGGGCTGGTC GCAGGCCAGT TGGGTCAGCG CCGAGGACTG GGCCGCGCGC
ATGCACCCGG AGGATCGCGA GCGGGTGGTG GGCTTCTGCG TGTCGCAGTC GCAGAACGGT
GTCGACCACG AGGCCGACTA CCGCGCGCTG ACCGCCGCCG GCGACTACGT GTGGATTCGC
GACGTGGTGC ACGTGGTGCG CGACGACAAG GGCGAGGTGG ACTCGCTGAT CGGCTTCATG
TTCGACATCA GCGAACGCAA GAAGACCGAG GAGCAACTGC TGACCCTGCA GAAGCAGCTG
GAGGAATATT CCTACCAGGA CGGCCTGACC GGCGTGGCCA ACCGGCGCAT GTTCGACCGG
GTACTCGCCA GCGAGTGGGC CAGTGCCCAG CGCAGCCAGC AGCCGCTGTC GCTGATCCTG
CTGGATATCG ACCACTTCAA GCAGTACAAC GATCATTACG GCCATGTTCA GGGTGATGAC
TGCCTGAAGA GCGTCGGCCA GGCCCTGACC CGCGCCGCCA GCCGCCCGCG GGACTTCGTC
GGGCGCTTCG GTGGCGAGGA GTTCGTGCTG GTGCTGCCGG AAACCGACGA GGCCGCCGCC
CGGCATATCG CCGAACGCTG TCGGCAGCAG GTGCGCCAGC AGCGCATTCC CCACGAGCGC
TCCTCGGTGT CGTCCCTGCT CACCATCAGC CTGGGCGTGG GCACCCTGGT GCCGGGCGCG
CAGGATCGGG CGCTGGATTT CCTCAACGCC GTCGACAAGC TGCTCTATCA GGCCAAGCAG
CGCGGGCGTG ACCGCCTGGA AGTGGCGAGC ATGACCTCCC GATCTTCGGG GGGCGATGCC
GCCGATGCCC GTGTTTGA
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| Protein sequence | MNQAIETDSA VYKTLLESTR AIPWKIDWKT MTFAYIGPQI ETLLGWSQAS WVSAEDWAAR
MHPEDRERVV GFCVSQSQNG VDHEADYRAL TAAGDYVWIR DVVHVVRDDK GEVDSLIGFM
FDISERKKTE EQLLTLQKQL EEYSYQDGLT GVANRRMFDR VLASEWASAQ RSQQPLSLIL
LDIDHFKQYN DHYGHVQGDD CLKSVGQALT RAASRPRDFV GRFGGEEFVL VLPETDEAAA
RHIAERCRQQ VRQQRIPHER SSVSSLLTIS LGVGTLVPGA QDRALDFLNA VDKLLYQAKQ
RGRDRLEVAS MTSRSSGGDA ADARV
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