| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0218 |
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| Symbol | |
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| ID | 5106185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 220390 |
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| End bp | 221370 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640501434 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001185724 |
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| Protein GI | 146305259 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAAGA CCTCTCTGGC GGCTGCCCTG GCCGCCCTGC TGTGTTCCGC ACAGGCTCTG
GCCGAGCCGA TCCTGATCAA GTTCTCCCAC GTGGTGGCCG AGGACACCCC CAAGGGCAAG
GGCGCCCTGA TGTTCAAGCG TCTGGCCGAG GAACGCCTGG CCGGCAAGGT GCAGGTGGAG
GTGTATCCCA ACTCCACGCT GTTCGGCGAC GCCGACGAGC TGCAGGCGCT GCGCGACAAC
AAGGTGCAGC TGCTGGCGCC GTCGCTGTCG AAGTTCGAGC AGTACACCAC CCAGCTGCAG
GTGTTCGATC TGCCCTTCCT GTTCGATGAC CTGGAGGCGG TCAAGCGCTT CCAGAAGCGC
GAGAAGAGCC GCGAGCTGCT GCGTTCGATG GCCGGCCACA ACATCTACGG CCTGGCCTAC
TGGAACAACG GCATGAAGCA GCTCTCGGCT ACCCGCGCGC TGCACACTCC CGCCGACGCC
GCCGGTCTGG CGTTTCGCAT CCAGCCTTCG GAAATCCTCG AGCAGCAGTT CGCCCGGGTC
GGCGCCAGCA GCCTGCGCCT GCCGTTCGCC GAAACCCAGG CCGCGCTGCA GGCCGGGCGC
GTGCAGGGCG CAGAGAACCC CTGGTCGAAT ATCGTCAGCC AGCAGCTGGG CGCGCTGCAG
CCCTACGTCA CCGAAACCGA TCACGGTGTG CTGAGCTACA TGCTGGTGAG CAACTCCAGC
TTCTGGACCA GCATTCCCTA TCCGATTCGC GTGCAGCTGG AGGCGATCGT CGATGAAGTC
ACCCTGGCGG TGAATCGCGA GGCCGAGGCA CTCAACGCCC GTGATCGCCA GCGTCTGGTC
GCGGCCGGCA ATCAGGTCGT CAGTCTCAGC AACGAGCAGC GCGCAGCCTG GCGTGCGGCG
ATGCAGCCGT TGTGGCAGGA GTACGAAGGC AAGATCGGCA GCGATGTGCT GCGTGCGGCG
CAGACGGTCA ACCGCCGCTG A
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| Protein sequence | MFKTSLAAAL AALLCSAQAL AEPILIKFSH VVAEDTPKGK GALMFKRLAE ERLAGKVQVE
VYPNSTLFGD ADELQALRDN KVQLLAPSLS KFEQYTTQLQ VFDLPFLFDD LEAVKRFQKR
EKSRELLRSM AGHNIYGLAY WNNGMKQLSA TRALHTPADA AGLAFRIQPS EILEQQFARV
GASSLRLPFA ETQAALQAGR VQGAENPWSN IVSQQLGALQ PYVTETDHGV LSYMLVSNSS
FWTSIPYPIR VQLEAIVDEV TLAVNREAEA LNARDRQRLV AAGNQVVSLS NEQRAAWRAA
MQPLWQEYEG KIGSDVLRAA QTVNRR
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