Gene Pmen_0210 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0210 
Symbol 
ID5106177 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp212334 
End bp213065 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content69% 
IMG OID640501426 
Productflagellar basal-body rod protein FlgF 
Protein accessionYP_001185716 
Protein GI146305251 
COG category[N] Cell motility 
COG ID[COG4787] Flagellar basal body rod protein 
TIGRFAM ID[TIGR02490] flagellar basal-body rod protein FlgF
[TIGR03506] fagellar hook-basal body proteins 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCGTC TCGGCTACAC CGCAATGACC GCCGCCAGCC GCACCATGAG TTCGCTCACG 
GTGCGCGCCA ACAACCTGGC CAACGTCAAT ACCCCCGGCT TTCGCGCCGA CCTGGAACAG
GCCCAGGCCG TGGCCGTGGA AGGCTACGGC TACGACAGCC GGCACCTGGC GCAGGTGAAG
AACAACGGCG TGAGCCTGGC GCCCGGCGCG CTGATGGCGA CCGGACGTGA TCTCGACGTG
GCGATCCAGG GCCAGGGCCT GTTCGCCGTC GAGGGTGACG ACGGCGCCGA GCGCTACACG
CGCAACGGCG CGCTGCAGGT CGATGCCGAC CTGCGCCTGA CCCTGAATGG CCGCGCCGTG
CTGGGCGAGG GCGGGCCCAT CGTGCTGCCC GAGTACGACA GCCTGCATAT CGGCCGCGAC
GGCACGGTGT CGGTGATCCC GCGCGGCGAC TTCCTCACCG CCGAGGTCGA TCGCATCCGC
GTGGTCGACG TCGCCGCCGG CGACCTGATC AAGGACGCCA GCGGTCTGCT GGCGCGCAGC
GACGGCCAGC CGGCCGAAGA TATGGAAGCG CCTGTACTGG TTTCCGGCTA TCTGGAGGCG
AGCAACGTCG GCGCCATCGA TCAGCTGGTG GCGACCATGA GCCTGAACCG CCTGTTCGAG
ACCCAGGTGA AGATGATGAA GGCCGCCGAG GACCTGTCCG AGGCCGGCAA CCGGATGATC
CGCGGCTCGT AG
 
Protein sequence
MDRLGYTAMT AASRTMSSLT VRANNLANVN TPGFRADLEQ AQAVAVEGYG YDSRHLAQVK 
NNGVSLAPGA LMATGRDLDV AIQGQGLFAV EGDDGAERYT RNGALQVDAD LRLTLNGRAV
LGEGGPIVLP EYDSLHIGRD GTVSVIPRGD FLTAEVDRIR VVDVAAGDLI KDASGLLARS
DGQPAEDMEA PVLVSGYLEA SNVGAIDQLV ATMSLNRLFE TQVKMMKAAE DLSEAGNRMI
RGS