| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0162 |
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| Symbol | |
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| ID | 5106842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 161388 |
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| End bp | 163232 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640501378 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001185668 |
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| Protein GI | 146305203 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.155295 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 65 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTGCG GGCTATGGGC AGGTGGGGTT TATGGAGCGG ATACGGAGCA GCAGGAAAAG
CTCGAGCGGC GCTGGGAGCT GCGCCTGGAT CTGCTGCGCC GTGGCCTGGT GCGCAGCAGC
CTGGCCGCCG AGGGGGCGGA CAAGGCGGTC GACCAGTGCA TGCAGGAGAT GCGCGACATC
TTGCGCCGCG ACGACATGGA TGCCGCGCTG GGCGGTTTGA TTCCGCGCCT GGAAAAGGCC
GTACTGGATT CGGAGCAGCG TCGCCAGCAG CGCGCCGAAG AGGCGACGGC GGCGCTGGCC
GGCCTGGTCG AGCAGCTGCA GCGCCTGCAG CCGCCGCGCG AGGTGCGCAA GGCGCTGAAG
AGCCTCGGCA AGCAGTTGCA GGCCGCCGTG GGTCAGCAGC ATCAGCTGCC GGCGCTGCTC
AGCCAGCTGC GCAACCTGCA GGGGCAGGCG CTGACCGTGC TGCAGGCGCC GGCCCAGGAA
CAGCCGGGGT TGTTGCAGCG CCTGTTCGGC AGTCGTGGCG ATGCCGCCGA ACAGGCGCAA
CCGGCCGAAC AGGCGGCTGC CGCTGCTGGC GAGACGCAGC AGATCGCCGC CGAACTCCTC
GACTCGCCGG CCGCGCCGGT GCCCGCGCCT GCCGCCGCGC TCAGCACTGC CGCGCCTGCC
GCCGCGCTCA GCACTGCCGC GCCTGCACGA TCGTCATTGG CGCCGCGGGC GGCGCTGGAC
AGCTTGCCGT TGCCGCCCGG CCTGGTGCCG CAGCCCGAGG ATGAGGATAG CCCCTTCTCG
CTGCCGACCA GCGAGCCGGG CTACAGCGCC GTGGCGCCGC ATATCGCCAG CAGCCTGCGC
AGCCTGCTCG ATGAGCTCGA ACTGCCGGCC CGGCATCGGC CGCAGGGCGA AGCCCTGCGT
CTGCGCCTGG AAGGTGGCCT GAACTGGTAC GAACTGGTGC CGGTGCTGGA TGACCTGGCG
GTGCTGGTGC TGGCCGTGAC CGACAGCGGT CAGCGCGAAT TCGCCGGCTA CCTCAAGCAG
CTCAACGAGC GGCTGGAAGC CTTCCTCGGC ACCCTCAGCG AGGCGCACGA AGGCTACAGC
GCGTCGGTGG AAAGCGCGCG CAGCTTCAAC CAGGAGCTGC GCGACCAGGT CACCGATCTG
CAGAACCGCG TGCAGGAGGC TGCCGATCTG GAGGCACTCA AGCAGGCGCT GGAGCAGCGC
CTGGACGGTC TGCTGCAGAG CGTCAGCGTG CATCAGCGCC AGCGCGACAG TCGCGAGGAG
GAAGTGGCCG AGCGCCTGCA GGGACTGGTG CAGCGTGTCG CCGACATGGA GCGCGAGGCG
CAGCAGTTTC GCGAACACAT CGAGGAGCAG CGGCAGAAGT CCCTGCTCGA TCCGCTCACC
GGGTTGCCCA ACCGGGCGGC CTGGAGCGAG CGCCTGGAGC TGGAAGTGGC TCGCCGCGCG
CGCTACGGCG GGGAGCTGCT GCTGGCGGTG CTCGACGTCG ACCATTTCAA GCGCATCAAC
GACGGCTACG GGCACCTGGC CGGCGACCGG GTGCTGAAGA TCATCGCCGG CGAACTGCAC
AAGCGCCTGC GCAAGACCGA CTTCATCGCC CGTTTCGGTG GCGAGGAATT CGTGCTGCTG
ATTCCGGCCA CTCCGCTGGA GGGTGGCATG CAGTTGCTGG AAACCCTGCG CGCCGCCATC
GAGGCCTGTC CGTTCCACTT CAAGGGCGAG CCGGTGACCA TCACCCTCTC CACCGGCCTT
GCCGAATTCC GCGACGGCGA GAGCGCCGAG GCGGTATTCG AGCGTGCCGA TCAGGCGCTG
TACCGGGCCA AGGGCAACGG ACGCAATCGC GTCGAACTGG GCTGA
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| Protein sequence | MICGLWAGGV YGADTEQQEK LERRWELRLD LLRRGLVRSS LAAEGADKAV DQCMQEMRDI
LRRDDMDAAL GGLIPRLEKA VLDSEQRRQQ RAEEATAALA GLVEQLQRLQ PPREVRKALK
SLGKQLQAAV GQQHQLPALL SQLRNLQGQA LTVLQAPAQE QPGLLQRLFG SRGDAAEQAQ
PAEQAAAAAG ETQQIAAELL DSPAAPVPAP AAALSTAAPA AALSTAAPAR SSLAPRAALD
SLPLPPGLVP QPEDEDSPFS LPTSEPGYSA VAPHIASSLR SLLDELELPA RHRPQGEALR
LRLEGGLNWY ELVPVLDDLA VLVLAVTDSG QREFAGYLKQ LNERLEAFLG TLSEAHEGYS
ASVESARSFN QELRDQVTDL QNRVQEAADL EALKQALEQR LDGLLQSVSV HQRQRDSREE
EVAERLQGLV QRVADMEREA QQFREHIEEQ RQKSLLDPLT GLPNRAAWSE RLELEVARRA
RYGGELLLAV LDVDHFKRIN DGYGHLAGDR VLKIIAGELH KRLRKTDFIA RFGGEEFVLL
IPATPLEGGM QLLETLRAAI EACPFHFKGE PVTITLSTGL AEFRDGESAE AVFERADQAL
YRAKGNGRNR VELG
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