| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0160 |
|---|
| Symbol | |
|---|
| ID | 5106840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 159403 |
|---|
| End bp | 160971 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640501376 |
|---|
| Product | transposase IS66 |
|---|
| Protein accession | YP_001185666 |
|---|
| Protein GI | 146305201 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3436] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.328115 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCCG TGCCCGCCCC CCTTCCTGAC GACCCAATCC TGCTCAAGCA TTTACTGCTG
CTGGCCAGTG AACAGGCGGC TGCGAAAGAT GCTCGCATAG AACAACTTCA GGAACAGGTC
GCCCTGCTGC GCCACAAGTT GTTCTCGCCC AAGTCCGAGC GCAGCCCTGA AGACGCCGAC
TCACCGCAGT TGGCCATGTT CAACGAGGTC GAAGAGCTGA TCGAAGCGGC CGCTGCGCCA
AGCGAAGCCG AAGCCGAAGC CGAAGCCGAA GCCGAAGCCG AAGAAATCGT TGCGCCGGTC
AAGCGCCGTG GCAAGCGCAA GCCGTTGCCG GCCAACCTGC CGCGTGTCGA AGTCATCCAC
GACCTGCCCG AGCACGAGCT GACTTGCGCC TGTGGCGCCT GCAAACAAGT CATCGGCGAG
GAGACCAGCG AACAGCTGGA GATTATCCCG ATGCAGGTGC GGGTCATCCG CCATATCCGC
AAGACCTACG CCTGCAAGGC CTGCGAAGCG GCGCCGCTCA CTGCCGACAA GCCGGCCCAA
CTGATCGAGA AGAGCCTGGC CAGCCCCAGC GTGTTGGCCA TGCTGCTGAC CACCAAGTAC
GCCGACGGCA TCCCGCTGTA CCGCTTCGAG AAGATGCTCA GCCGCCACGG CGTCGACATA
CCACGCCAGA CCCTGGCGCG CTGGGTGATC CAGAGCGGTG AACAGCTGCA ACCGCTGCTC
AACCTGCTGC GCGACAAGCT GCTCGAATAC CCCGTTTTGC ACTGCGACGA AACGCGCCTG
CAGGTGCTGC ATGAACCGGG ACGCGATCCC ACCGCGCAGT CCTGGATGTG GGTACAAAGC
GGTGGACCAC CGGATAAGCC GGTGATCCTC TTCGACTACA CCGCCAGCCG CGCGCAGGAG
GTGCCGCTGC GCTTGCTCGA CGGCTATCGC GGCTACCTGA TGACCGACGA CTACGCCGGC
TACAACGCCG TGGCCGCGCA AGAAGGCATC GAACGCCTCG GCTGCTGGGC GCATGCGCGG
CGCAAGTTCG TCGAGGCGCA GAAAGTGCAA CCCAAGGGCA AAACCGGCCG TGCCGACATG
GCGCTGAACC TGATCAACAA GCTCTACGGC ATCGAGCGTG ACCTGAAGGA CGCCTGCGAT
ACCGAGCGCC TGGTCGCCCG TCAGCAACGC AGCCAGCCGC TGCTCGATCA ACTCAAGACC
TGGCTGGACA AGACCCAGCC GCAGGTCGTC GGGCAGACGG CGCTGGGCAG GGCGGTGAAC
TACCTGGCCA GCAACTGGAG AAAGCTGGTG CGCTACGTCG AAGGTGGACA TCTGCCGATC
GACAACAACC GCGCGGAGAA CGCCATCCGC CCGTTCGTTA TCGGGCGCAA GAACTGGCTG
TTCAGCGACA CGCCCAAGGG GGCCACGGCC AGCGCACAGA TCTACAGCCT GATCGAAACC
GCCAAGGCCA ATGGCCAGGA GCCTTACGCC TGGCTGCGCC ACATCCTCGA ACGCCTGCCG
GCCGCCAATA GCGTCGAGGA TTACGAAGCG CTGCTGCCGT GGAATTGCTC GCCAGTGAGC
GCATCCTGA
|
|---|
| Protein sequence | MIAVPAPLPD DPILLKHLLL LASEQAAAKD ARIEQLQEQV ALLRHKLFSP KSERSPEDAD
SPQLAMFNEV EELIEAAAAP SEAEAEAEAE AEAEEIVAPV KRRGKRKPLP ANLPRVEVIH
DLPEHELTCA CGACKQVIGE ETSEQLEIIP MQVRVIRHIR KTYACKACEA APLTADKPAQ
LIEKSLASPS VLAMLLTTKY ADGIPLYRFE KMLSRHGVDI PRQTLARWVI QSGEQLQPLL
NLLRDKLLEY PVLHCDETRL QVLHEPGRDP TAQSWMWVQS GGPPDKPVIL FDYTASRAQE
VPLRLLDGYR GYLMTDDYAG YNAVAAQEGI ERLGCWAHAR RKFVEAQKVQ PKGKTGRADM
ALNLINKLYG IERDLKDACD TERLVARQQR SQPLLDQLKT WLDKTQPQVV GQTALGRAVN
YLASNWRKLV RYVEGGHLPI DNNRAENAIR PFVIGRKNWL FSDTPKGATA SAQIYSLIET
AKANGQEPYA WLRHILERLP AANSVEDYEA LLPWNCSPVS AS
|
|---|
| |