| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0140 |
|---|
| Symbol | |
|---|
| ID | 5106820 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 140508 |
|---|
| End bp | 141437 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640501356 |
|---|
| Product | auxin efflux carrier |
|---|
| Protein accession | YP_001185646 |
|---|
| Protein GI | 146305181 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0679] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACCG TTCTCAACGT CCTGTTGCCG ATCTTCGGTC TGATTCTGGT CGGCTATATC
TGTCGCCGCA GCAATCGCCT GGGACCGACC GCTGCCTCGG AGATGAACCG CTTCGTGGTC
TGGCTCGGCC TACCCGCCCT GCTCTTCAGC CTGACGGCCA AGGCTGACTG GGCGCACATC
TGGCAGCCCG GTTTCCTGCT GGCGTTCACC GGCGGCACCC TGGCGGTGTT TCTGCTCACC
CTGGCCTACC GCTGGAAAAC CACCGGCAGC CTGGTCGACG CCAGCATCGA CGGACTCAGC
GCCGGCTACG CCAACACCGG TTACATCGGC ATTCCGCTGT GCGTGCTGGT GCTCGGCGAA
GACGGCATGG CGCCGGCCCT GATCGCCTCG CTGATCGTCG TCTGCCTGCT GTTCGCCCTG
GCGGTGGTGT GCATCGAGGT GGGGCTGCAG AGCCAGAAGG GCCTGGGCGG AGCGATTGCC
CAGGTCAGCC TGGCGCTGCT GAAGAACCCG CTGGTGGTGG CGCCGGTGCT CGGCGCGCTC
TGGTCGTTCG GCGGCCTGTC ACTCGCGCCG GCGCTGGACG AGTTCCTGCG CCTGCTCGGC
GCGGCGACCG TGCCCTGCGC GCTGGTGTCG CTGGGCCTGT TCCTGGCGCA GCGGCAGAGC
GGTCCGGCCA AGGGCGCCTG GCCGCTGGTG GCGCTCAAGC TGGCGCTGCA GCCACTGGTG
ACCTGGTTCA TCGCCTTCGT GCTGCTCGAC CTGCCGCCGT TCTGGGCTCA CGCTGCCTTG
CTGCTCAGTG CGCTGCCCAC CGGCACCGGC CCCTTCATGC TGGCCGAGTA TTACCAGCGC
CAGGCCGCGC TGGTGTCGCG GGCCATTCTG TTCTCGACCC TCGGCTCGCT GCTGACCCTG
TCGCTGATCC TGCTGCTGAT CACGCCTTGA
|
|---|
| Protein sequence | MSTVLNVLLP IFGLILVGYI CRRSNRLGPT AASEMNRFVV WLGLPALLFS LTAKADWAHI
WQPGFLLAFT GGTLAVFLLT LAYRWKTTGS LVDASIDGLS AGYANTGYIG IPLCVLVLGE
DGMAPALIAS LIVVCLLFAL AVVCIEVGLQ SQKGLGGAIA QVSLALLKNP LVVAPVLGAL
WSFGGLSLAP ALDEFLRLLG AATVPCALVS LGLFLAQRQS GPAKGAWPLV ALKLALQPLV
TWFIAFVLLD LPPFWAHAAL LLSALPTGTG PFMLAEYYQR QAALVSRAIL FSTLGSLLTL
SLILLLITP
|
|---|
| |