Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0124 |
Symbol | |
ID | 5106309 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 124242 |
End bp | 125336 |
Gene Length | 1095 bp |
Protein Length | 364 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640501340 |
Product | extracellular solute-binding protein |
Protein accession | YP_001185630 |
Protein GI | 146305165 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.996565 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCCA TCAAACAGAT GCTCGGCGTC GCCCTGTGCG GCGCCACCCT GCTCAGCGGC GCGGTGCAGG CCAAGGAGCT GCGCGTTTAC AACTGGGCGG ATTACATCCT CCCGGAGGTG CCCAAGGACT TTCAGAGGGA GTCCGGCATC CGCATCACCT GGGACACCTT CGAGACCAAC GAGGCGCTGG AGGCCAAGCT GCTCACCGGC AACTCCGGTT ATGACCTGGT GATTCCGTCC AACCAGTTCC TCGAAACCCA GATCAAGGCC GGCGTGTTCG CCCCGCTGGA CAAGTCCAAG CTGCCCAACT GGAAGAACCT CGACCCGGTA CTGCTCGGCC TGCTGGAGAA GAACGACCCC GGCAACCAGT ACGGCGTGCC CTACATGTAC GGCACCGTGC TGATCGGCTA CAACCCGGAC AAGGTCAAGG CTGCGCTCGG CGATGATGCC CCGGTCAACA GCTGGGATCT GGTGTTCAAG CCCGAGTACA TGGAGAAGCT GAAATCCTGC GGCGTGGCTA TGCTCGACTC GCCCACCGAG ATCATCCCCA TCGCCCTGCA CTACCTGGGC CTGGACCCCA ACAGCAGCAA TCCCGCCGAC TATGACAAGG TCACCGAGCT GCTGCTCAAG GTGCGCCCCT ACGTGGCCTA CTTCCATTCC GCCAAGTACA TGACCGACAT CGCCAACGGC GACATCTGCG TGGCCATCGG CTACTCCGGC AGCTTCTACC AGTTCGCCAA CCGCGCCAAG GAAGCCGGCA ACGGTGTGGT GATCAACTGG CGCCTGCCCA AGGAAGGCGC GCCGATCTGG TTCGACACCT GGGCCATCCC CAAGAGCGCG CAGAACGTCG ATGAAGCCCA TGCCTTCATC AACCACCTGC TCGATCCCAA GGTCATCGCG CCGATCAGCG ACTTTCTCGG CTACCCTAAC CCCAACGTGC CGGGCATGCA GCTGGTGGGC GCGGAGATCG CCGACGATGC CGATCTGACG CCGACGCCGG AGCTGCAGAA GTCGCTCTAC GTAGTGCAGC CGCTGCCGCA GAAGATCGAG CGGGTGCGTA CGCGCGCCTG GACATCGATC AAGTCGGGCA AGTGA
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Protein sequence | MKAIKQMLGV ALCGATLLSG AVQAKELRVY NWADYILPEV PKDFQRESGI RITWDTFETN EALEAKLLTG NSGYDLVIPS NQFLETQIKA GVFAPLDKSK LPNWKNLDPV LLGLLEKNDP GNQYGVPYMY GTVLIGYNPD KVKAALGDDA PVNSWDLVFK PEYMEKLKSC GVAMLDSPTE IIPIALHYLG LDPNSSNPAD YDKVTELLLK VRPYVAYFHS AKYMTDIANG DICVAIGYSG SFYQFANRAK EAGNGVVINW RLPKEGAPIW FDTWAIPKSA QNVDEAHAFI NHLLDPKVIA PISDFLGYPN PNVPGMQLVG AEIADDADLT PTPELQKSLY VVQPLPQKIE RVRTRAWTSI KSGK
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