Gene Pmen_0124 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0124 
Symbol 
ID5106309 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp124242 
End bp125336 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content63% 
IMG OID640501340 
Productextracellular solute-binding protein 
Protein accessionYP_001185630 
Protein GI146305165 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0687] Spermidine/putrescine-binding periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.996565 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCCA TCAAACAGAT GCTCGGCGTC GCCCTGTGCG GCGCCACCCT GCTCAGCGGC 
GCGGTGCAGG CCAAGGAGCT GCGCGTTTAC AACTGGGCGG ATTACATCCT CCCGGAGGTG
CCCAAGGACT TTCAGAGGGA GTCCGGCATC CGCATCACCT GGGACACCTT CGAGACCAAC
GAGGCGCTGG AGGCCAAGCT GCTCACCGGC AACTCCGGTT ATGACCTGGT GATTCCGTCC
AACCAGTTCC TCGAAACCCA GATCAAGGCC GGCGTGTTCG CCCCGCTGGA CAAGTCCAAG
CTGCCCAACT GGAAGAACCT CGACCCGGTA CTGCTCGGCC TGCTGGAGAA GAACGACCCC
GGCAACCAGT ACGGCGTGCC CTACATGTAC GGCACCGTGC TGATCGGCTA CAACCCGGAC
AAGGTCAAGG CTGCGCTCGG CGATGATGCC CCGGTCAACA GCTGGGATCT GGTGTTCAAG
CCCGAGTACA TGGAGAAGCT GAAATCCTGC GGCGTGGCTA TGCTCGACTC GCCCACCGAG
ATCATCCCCA TCGCCCTGCA CTACCTGGGC CTGGACCCCA ACAGCAGCAA TCCCGCCGAC
TATGACAAGG TCACCGAGCT GCTGCTCAAG GTGCGCCCCT ACGTGGCCTA CTTCCATTCC
GCCAAGTACA TGACCGACAT CGCCAACGGC GACATCTGCG TGGCCATCGG CTACTCCGGC
AGCTTCTACC AGTTCGCCAA CCGCGCCAAG GAAGCCGGCA ACGGTGTGGT GATCAACTGG
CGCCTGCCCA AGGAAGGCGC GCCGATCTGG TTCGACACCT GGGCCATCCC CAAGAGCGCG
CAGAACGTCG ATGAAGCCCA TGCCTTCATC AACCACCTGC TCGATCCCAA GGTCATCGCG
CCGATCAGCG ACTTTCTCGG CTACCCTAAC CCCAACGTGC CGGGCATGCA GCTGGTGGGC
GCGGAGATCG CCGACGATGC CGATCTGACG CCGACGCCGG AGCTGCAGAA GTCGCTCTAC
GTAGTGCAGC CGCTGCCGCA GAAGATCGAG CGGGTGCGTA CGCGCGCCTG GACATCGATC
AAGTCGGGCA AGTGA
 
Protein sequence
MKAIKQMLGV ALCGATLLSG AVQAKELRVY NWADYILPEV PKDFQRESGI RITWDTFETN 
EALEAKLLTG NSGYDLVIPS NQFLETQIKA GVFAPLDKSK LPNWKNLDPV LLGLLEKNDP
GNQYGVPYMY GTVLIGYNPD KVKAALGDDA PVNSWDLVFK PEYMEKLKSC GVAMLDSPTE
IIPIALHYLG LDPNSSNPAD YDKVTELLLK VRPYVAYFHS AKYMTDIANG DICVAIGYSG
SFYQFANRAK EAGNGVVINW RLPKEGAPIW FDTWAIPKSA QNVDEAHAFI NHLLDPKVIA
PISDFLGYPN PNVPGMQLVG AEIADDADLT PTPELQKSLY VVQPLPQKIE RVRTRAWTSI
KSGK