| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0108 |
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| Symbol | |
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| ID | 5106293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 108566 |
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| End bp | 111730 |
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| Gene Length | 3165 bp |
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| Protein Length | 1054 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640501324 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_001185614 |
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| Protein GI | 146305149 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3179] Predicted chitinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGACA ACAAACCGAT CAATTGGGCC TATCCGTTCA AGACCGCCGG CGAAGACAGT
AAAGAAGTCA GCGATCCGCA GATATATCTC GATGCCTTGG CCAAAGCCAA AGATGGCTTC
TATCCCATGG GGGCCAATGG TCTTTGGCAT GGAGGCGTGC ATTTCGATGA CAACACCGCA
GGGAGCCTTG ACCAGTCCTC GATTCGTTGT ATCGCGGACG GCGAGGTGAT TGCCTACCGG
ATCGACCAGC GCTATCCCAC CACCCAATAT GGTGACGGCC GCGCGGTCGT GCATCTGCCG
TTCTCAACAG GGTTCGTATT GGTCAGGCAT CGTCTCGTAC TGCCGTCTTT ACCTGCACCG
ACCGCTCCTG GTGGTGAGCC AGGCGACACC ACAACAGCCG CAACACCTAC AGATACAGCC
GCGTCATCGG CTGCGAGCAC AGAAAGCGCG ACAGCCAGTG AAGGGCTGAC TTTTTACAGC
CTGTATATGC ACCTGCTCGA CTGGGACAGC TATAAATCTG CCACTGCCCC TGAGCCCGCA
GATTTCCTTG CGCCGACCTG CTATGCGGTC AAGTCCACCA CTAATGATCC GCTCATGGGC
TTGCGAGTCC GTGCATTGAA CGACGACGGA ACGAACAAAG TACTCGCCTT GCTCCCCAAG
GGCTGTAAGG TCACGCTCGG CGAAGCGCAC AGCATCAAGA CGAAATATAA AAAGCTGCTC
AGCATTGATG AAGGCATGGC CATACCCGCC CTACCGGCAG GTACCGAGGG CTGGGTGTAT
GAGGCTGAAC TGACCGACAA CACCGTAGCG GATAAGGCCA CGGATACTGA GTCCGAGCTC
ACCCTTAGTC ATCAGGGGGT GAGGGTTCGC AGGGAGGGCA AAGGTAATGG CACGATCATT
GGCGTATTGC CGCGTGGTGC CACTCTCAAG GTGGGCGAGA AACAGAGAAG CGGTTATTGC
AAGGTGCTGG AGGTCATGGA CTATCGCGGC GTACCCGCAC TGCCCAACGG GGCGGATGGC
AAACCGCTAG GCTACGTTTT CTTCGACGCA CTCGAAACAC AGAAAACCGA GCCCAGTGCG
CTGGATAGCG TTCATATCTT GCCCAAACCA TACTCGATCA AGGCCGGTGA ACTGGTAGGG
CATATAGGTA AATACCAGAA CCAAGACGAA GGCACGGCCA AGAAACGCCT GCACCTGGAA
GTGTTCACCA GTGAGGACGT CCCGGCCTTT ATCGAAAAAA GCCGTGCTAT CGGGGAAAAG
CTACCCGACG AACAGAAGAC CCTGATCAAG GTGGACAAGG GCTCGAAGAT CGTCCAGCCC
GCCGCCGCCG ATGCACAAGT CGAAGCGAGC GTGGATGTGC GCCTCTGCAG CGACTCTCCC
AAGGCCGGTT GCTGGGCCAA GGTGCAGAAG TACGCTATCT GCAACGCTGA CAAGAACAGC
GAGCTGGGCA GTTACAACTC GACAAAGCTA ACCTACACGC TAGGCGCTGC GCAGAAGACC
ATCCTGGCAT CCCGAATGGG CCTCAACGCT GCGGATATGC CGGATCAGGT CGACTTTCTC
AAGGTGTATT CCAATTCGGC CGATGGGGGC GACCCTCATG ACTACGAGAG TGGCAGCATC
CCTTCGACCC ATCCATGGCG CAAAATCGGT GCTGTTGTTG GTAAACCCTT CTGGGTCAAA
CGATCCGCGC TGAACGCCCA AGGCCGGCGT ACGAGCACAG CAGGCTCGCT TGATGCCTGG
AGCGAGTTCC CTCTGTACAG TGGGCTCGAA GGTGAAGCCA GTGGTTACGT ACGCATACTG
CCCGCCAGCT CCTGGGATGC CTTGCCCGAT GAACGCAAAG CCATCGACGC TGAACAAGTA
CGCTGGTGGT ATGTCACTGT CGGAGATATG GAAGGCAACG ACATCTCCGG TTGGGCACCA
GAAAAAGATC TGATCGTCAC ACGTCACTCC CCTTGGGAAT GGCCAGGTTT CAGTACCCTC
CAAGACAAAG TCTCGCTGGA CGCCCACCTG GCAAGAACCC TCGACGCCGC CGGGCGTGCT
ACAGAAGAGG AGACCGAGAG CTACGCGGCC CTGATCGAAG AGGCCGAGCG CGGCCCTATC
CTCAGCAAGC TGTACGAAAT CATCGACCAG CCAGACGAAA AGGGCGTCCG CGATAACAAG
CTCACTCCAG AGGAATTCAA GGCTGCCCTC GCCAAACCCT GGTTGGCACA GCAGCTTTCC
CTACTGATTA GCCAGCATGA AAGCGAATGG TTCTGGAACG AGAGCAAATG GAATCAGCTA
GACAAGCTGA TGGAGCACAC GCCGGAAGAT CCGAATCCTC AGTGGTTACG CGAGAAGGAG
CGGATTAAAA CGCTTAGCTG GTGGAAGGAA TTGGCAGGGC AGCCAGGGAT AGCGGCGGAT
GGAATGGCTT GGCATTTTCA ACCGATTGGT TTGGTTGAAA GTTTTAAAAA CAGCTCAAGT
TGCTGCGAGC TATCTACCGA TAAATTCAAA GCTATTTTTG GTGAAAGATC TATATTTTCA
GCATGGAATA TGCCGAGAGA CAGCAAGGCA TTCAATATTT CAATCGAGGA ATTCGTAGAG
CTTATAAATT CCGGCTTCAA GTCCTATGGA TTTGAGTCCT GCCTTCATAA GGCGCACTTT
CTTGCTCAGT GCTATCATGA AAGCGATCAT TTTAACACTA CTATCGAGTA TGCAGACGGT
ATGGACTATG ACTTAGCAAC TCATCCGATC ACCGTATGCG ATACATATGG CGCGGACAGC
AGGACATGTC GAAGGCACCA TCAAATCATG GCCGAAGGGA ATACAACCGT AGGGGACGGG
CCAAAATATA AAGGGCGGGG ACTCATACAA ATAACATGGA AGAGTGCCTA TCAAGCCTTT
AGCACTTACA GTGGAGTTGA CTGTGTTAGC AATCCTGAAA TAATCGGAAG AAATATGAAC
ATGGCAATAA ATGCATCGCT ATGGTTTTGG ACTATATTCA AAGGAGAGAA TCTAAACGCA
AAAATCGAAA GATACTATCA AGAGCTTTCA GGCAACGCCA GCATGTCAGA AACACAAAAA
GACGAAGAGG TGGTGCGCAG AATAACAGCA ATAGTCAATG GCGGTGATCG CGGGCTTTCT
GAAAGGAAGC AGCTATTTAA AAAAATCAGA GAGCAATTAA AATGA
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| Protein sequence | MADNKPINWA YPFKTAGEDS KEVSDPQIYL DALAKAKDGF YPMGANGLWH GGVHFDDNTA
GSLDQSSIRC IADGEVIAYR IDQRYPTTQY GDGRAVVHLP FSTGFVLVRH RLVLPSLPAP
TAPGGEPGDT TTAATPTDTA ASSAASTESA TASEGLTFYS LYMHLLDWDS YKSATAPEPA
DFLAPTCYAV KSTTNDPLMG LRVRALNDDG TNKVLALLPK GCKVTLGEAH SIKTKYKKLL
SIDEGMAIPA LPAGTEGWVY EAELTDNTVA DKATDTESEL TLSHQGVRVR REGKGNGTII
GVLPRGATLK VGEKQRSGYC KVLEVMDYRG VPALPNGADG KPLGYVFFDA LETQKTEPSA
LDSVHILPKP YSIKAGELVG HIGKYQNQDE GTAKKRLHLE VFTSEDVPAF IEKSRAIGEK
LPDEQKTLIK VDKGSKIVQP AAADAQVEAS VDVRLCSDSP KAGCWAKVQK YAICNADKNS
ELGSYNSTKL TYTLGAAQKT ILASRMGLNA ADMPDQVDFL KVYSNSADGG DPHDYESGSI
PSTHPWRKIG AVVGKPFWVK RSALNAQGRR TSTAGSLDAW SEFPLYSGLE GEASGYVRIL
PASSWDALPD ERKAIDAEQV RWWYVTVGDM EGNDISGWAP EKDLIVTRHS PWEWPGFSTL
QDKVSLDAHL ARTLDAAGRA TEEETESYAA LIEEAERGPI LSKLYEIIDQ PDEKGVRDNK
LTPEEFKAAL AKPWLAQQLS LLISQHESEW FWNESKWNQL DKLMEHTPED PNPQWLREKE
RIKTLSWWKE LAGQPGIAAD GMAWHFQPIG LVESFKNSSS CCELSTDKFK AIFGERSIFS
AWNMPRDSKA FNISIEEFVE LINSGFKSYG FESCLHKAHF LAQCYHESDH FNTTIEYADG
MDYDLATHPI TVCDTYGADS RTCRRHHQIM AEGNTTVGDG PKYKGRGLIQ ITWKSAYQAF
STYSGVDCVS NPEIIGRNMN MAINASLWFW TIFKGENLNA KIERYYQELS GNASMSETQK
DEEVVRRITA IVNGGDRGLS ERKQLFKKIR EQLK
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