| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0104 |
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| Symbol | |
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| ID | 5106289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 101174 |
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| End bp | 104713 |
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| Gene Length | 3540 bp |
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| Protein Length | 1179 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640501320 |
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| Product | ImcF domain-containing protein |
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| Protein accession | YP_001185610 |
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| Protein GI | 146305145 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAGCT TCTTCGCCAA ACTTGGCGCC TTTTTCCGCA AGACCTGGGT CTGGAGCCTG
CTGCTGGTGC TGGTCCTCGC CCTGCTGGTG TGGTTCGTCG GCCCGCTGCT GGCGGTCGAC
GACTACAAGT TCTGGGAGTC GGCCACCAGC CGCCTGCTGA CCATCAGCCT GCTGTTCCTG
CTCTGGGGCC TGGCCATGGT GTTCGCCAGC TGGCGCGCCA CCGCACGCAA GAAGGCCGAG
GAGAACGACG CCGAGGCGCA GGAGCGCCTG CGCCGCGAGG AGCAGATCGG CGAGGAGCAG
AATGAGCTGC GCCACCGCTT CAAGGACGCC CTGCGCACCC TCAAGCGCTC CAGCCTGTAC
CGCGGGCGCA GCGAGAAGTG GCGCAACGAT CTGCCCTGGT ACCTGCTGCT CGGCCCGCAG
GGCAGCGGCA AGACCAGCCT GCTGGACTTC TCCGGCCTGG ACTTCCCGCT CAACCGCGGC
GACAGCCAGC GCCTGACCAA GGACGTCTCC GGCACCCGTT ATGCCGACTG GTACTTCGCC
GATCACGCCG TGCTGATCGA CACCGCCGGG CGCTACCTGA CCCAGCCAGA CGCGCAGGTC
GACGGCCGCG CCTGGGGCAC CCTGCTCGGC CTGCTGCGTC AGCGCCGCGC GCGCCCGCTC
AACGGCGTGC TGGTGAGCAT TCCGGTGGAG CAGCTGCAGG GCGGCAGCGA GGTGGAGCTG
GAAACCCTGG CCCGCCAGAC CCGCCAGCGC CTGCACGAGA TCCATCAGCG CCTGGGCGCC
GACGTGCCGG TCTACCTGGT GCTGAGCAAG GCCGACAAGG TGCTGGGCTT CGACGAGTTC
TTCGACCAGC TGTCGCGCGA GGAGAGCGAG CAGGTGCTCG GCGCCAGCTT CCGCAAGGAG
CAGAACGCCA GCGACGTGGC CGTGGTGCGC CAGGAGTTCG AAGAACTGCT GCGCCGCCTC
AACAGCCAGG TGATCCTGCG CATGCACCAG GAGCGTGATA CCCAGCGCCG TGGCCGCATC
CTCGACTTCC CGCACCAGCT CGGCCAGATC GGCGAGCGCC TGTGCCTGTT CATCGAACTG
GCCTTCGCCG GCAACCGTTA CCAGCGCGCC AGCAAGCTGC GCGGTTTCTA CCTGACCAGC
GCACCGCAGC TCAACGAACA GCTCGACCCG CTCACCGCCG GCATCGGCCG CAACCTCGGC
CTGGCCGGCA GCGCGCTGCC GACCTTCCGC ACGGGCCGTG CACGCTTCAT CAACCACCTG
CTCAGCCGGG TGATCTTCCC CGAGGCCGAC CTGGCCGGAC TCGACCAGAA GGAAGTGCGC
CGCATCGACT GGGGCCAGCG CGCCATGTAT GCCACCGCCT TCGCCGTGCT GGCGCTGTTC
GGCGTGCTCT GGGCCAGCGG CTTCTCGGCC AACCACGGGC GCCTGGAACA GCTGCGCGAG
ATCGCCCAGA AGCTCACCCG CGAGCACCAG GCGATCAACC CGCAGGACGA CGCCCTGCAG
ACCCTCAAGG CGCTGGACAG CAGCTACGCC GCCACCCTGG TGTTCCCGCC CAAGGGCGAG
GTGTCCTACC TGCAGCGTAC CGGCCTGTTC CAGGGCGAGG CGGTCAATCC GGCCGTTTAT
TCGACCTACC GCGCCGAGCT GGAAACCCTG CTGCTGCCTC GCGTGGCGCG GCAGCTGGAG
GCGCAGATCC GCGCCAACCT CGGCGACCGC GAGCGCCTGC TCGGCAGCCT GCGCGCCTAC
CTGATGCTCA ACCTGGAACA GCGCCGCGAC GCCGCCTTCC TCAAGGAGTG GGTAGCCGCC
GACTGGTCGC TGCGCTATGC CGGCAACAGC CCGGCGCAGC ATGGCCTCAA CACCCATTTC
GCCCGTCTGC TCGACGAGTC CTTCGCGCCC TATGCGCTCA ACGCCCAGCT GGTCGCCCAG
GCGCGCCAGG TGCTGCGCAG CGAGTCGCTG GCCAATGTGG TCTATCGCAT GCTGCGCGAA
CAGGCGCGCA GCCTGCCGGA CTACCGTCTG AGCCAGAAGC TCGGGCCGCA GGCCGGGCTG
ATCAATGGCA GCGACTACGC CATCCCCGGC TTCTACACCC AGGCCGGCTA CAGCAAGACC
TTCACCGCCC AGGGCGGCAA CCTGGTGCGC GAGATCCTGC GCGACAACTG GGTGCTGGGC
GAGGGCGAGA GCCTCAGCGC CGGCGACCTC GGCCGCCTGA TGGTAGAGCT GGAGCAGCTG
TACTTCCGCG ATTACGGCAA CTACTGGGGC GAGGCCATTG CCCAGCTCAG CCTGGAGCCG
ATCGGCAGTG CCGGCCGTGG TGCTGCCCTG CTCGGCGGCC TGACCGCGGC CAACTCGCCG
CTGCTGCAAC TGCTGGTGGA AGTGCGCGAC AACACCCGCT TCAAGGGCCT GGCCGAGGCC
GCCGATGACG CCGGTGCCGC CGCCGAAGCG CTGGAGGGCG CCAAGGGCAA GCTGGGCAAG
GCCGCCAAGC TGGCCAGCGC TGCCGCCGAA CAGGCGCAGC AGGCCCTGGC CAAGAACACC
CCGGACACCG CGCGCAAGAC CCTGGAACGC CGCTTCGAGG TGCTGCACAA GCTGCTCGAC
GACAACGGCG GCGCCGGCGT CGAACTGGCC GCCAGCCTGC AGGCATTGGA CGAACTGCAG
CGCCAGCTGG CCAGCCTGGC CAATGCCGGT GCCAGCGACC AGGCCGCGTT CGAGATGGCC
AAGGCGCGCA TGGCCGGCAA GCGCGATGCG ATCAACCAGG TACGCAGCGC CGCCGCGCGC
CTGCCGCAGC CGGTGGGCAA CTGGCTGGCG CTGCTGGCCG AGGACAGCTG GACGCTGGTG
CTTAACGACG CCTACCACTT CCTCAACCAG CGCTATCAGA GCGAGCTGTA CGCCGCCTAC
GACAACTCGC TGAAGCAGCG TTACCCGTTC AGCGCGCACA GCGAGAGCGA CGTGGCGGTG
GCGGATTTCC GCGAGTTCTT CAAGGCCCAG GGCATCGCCG AGCGCTTCTT CGACCAGTAC
CTGCGCCCCT TCGTCAGCGG CAGCGCCGAC GAATACCGCC TGCGCCGCGT CGATGGCCGC
GGCCTGCCGC TGTCGCGCGA GTTCCTCCTG CAGATGAGCC GCGCCCAGGT GATCCGCCGC
AGCTTCTTCG CCGAGAACCC GGCCGAGCCG CAGGTGCTGT TCAAGCTCGA GCCCTACTCG
CTGGACTCCA GCCTGAGCCG CGCCGACTTC CGCTTCGGCA AGCAGCAGCT GGAGTACCGT
CACGGTCCGA TCGTCGCCAC CGCCTTCCGC TGGCCGGCGG CGAGCGAGGA AGACCGCACC
AGCCTGGTGG TCGAGGAGCT TGGCGGTCGC CGCGTCGGCA TCGAGAAGAA CACCGGCCCC
TGGTCGCTGT TCCGCCTGCT CGACCTGATG GACGTGGACT ACCACAGCGG TCGTGACGTG
CTGATCCTCA AGGCCAACCT GGGCGGCCTG CACGCCAACT ACCTGCTGCA CAGCCAGCGC
TCGCCGAACC CGTTCGACAT CGGCCTGCTG CGCAGCTTCA AGCTGCCGGC GACGCTCTGA
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| Protein sequence | MKSFFAKLGA FFRKTWVWSL LLVLVLALLV WFVGPLLAVD DYKFWESATS RLLTISLLFL
LWGLAMVFAS WRATARKKAE ENDAEAQERL RREEQIGEEQ NELRHRFKDA LRTLKRSSLY
RGRSEKWRND LPWYLLLGPQ GSGKTSLLDF SGLDFPLNRG DSQRLTKDVS GTRYADWYFA
DHAVLIDTAG RYLTQPDAQV DGRAWGTLLG LLRQRRARPL NGVLVSIPVE QLQGGSEVEL
ETLARQTRQR LHEIHQRLGA DVPVYLVLSK ADKVLGFDEF FDQLSREESE QVLGASFRKE
QNASDVAVVR QEFEELLRRL NSQVILRMHQ ERDTQRRGRI LDFPHQLGQI GERLCLFIEL
AFAGNRYQRA SKLRGFYLTS APQLNEQLDP LTAGIGRNLG LAGSALPTFR TGRARFINHL
LSRVIFPEAD LAGLDQKEVR RIDWGQRAMY ATAFAVLALF GVLWASGFSA NHGRLEQLRE
IAQKLTREHQ AINPQDDALQ TLKALDSSYA ATLVFPPKGE VSYLQRTGLF QGEAVNPAVY
STYRAELETL LLPRVARQLE AQIRANLGDR ERLLGSLRAY LMLNLEQRRD AAFLKEWVAA
DWSLRYAGNS PAQHGLNTHF ARLLDESFAP YALNAQLVAQ ARQVLRSESL ANVVYRMLRE
QARSLPDYRL SQKLGPQAGL INGSDYAIPG FYTQAGYSKT FTAQGGNLVR EILRDNWVLG
EGESLSAGDL GRLMVELEQL YFRDYGNYWG EAIAQLSLEP IGSAGRGAAL LGGLTAANSP
LLQLLVEVRD NTRFKGLAEA ADDAGAAAEA LEGAKGKLGK AAKLASAAAE QAQQALAKNT
PDTARKTLER RFEVLHKLLD DNGGAGVELA ASLQALDELQ RQLASLANAG ASDQAAFEMA
KARMAGKRDA INQVRSAAAR LPQPVGNWLA LLAEDSWTLV LNDAYHFLNQ RYQSELYAAY
DNSLKQRYPF SAHSESDVAV ADFREFFKAQ GIAERFFDQY LRPFVSGSAD EYRLRRVDGR
GLPLSREFLL QMSRAQVIRR SFFAENPAEP QVLFKLEPYS LDSSLSRADF RFGKQQLEYR
HGPIVATAFR WPAASEEDRT SLVVEELGGR RVGIEKNTGP WSLFRLLDLM DVDYHSGRDV
LILKANLGGL HANYLLHSQR SPNPFDIGLL RSFKLPATL
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