| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0093 |
|---|
| Symbol | |
|---|
| ID | 5106278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 88331 |
|---|
| End bp | 89776 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640501309 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001185599 |
|---|
| Protein GI | 146305134 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4104] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGGTA AACCCGCAGC CCGCCTCGGC GATCCCACCG CCTGCCCGAT TCCCGGCCAC
GGCACCAACC CGATCGCCGC CGGCTCGCCC GACGTGCTGT TCGACAGTCT GCCCGCCGCG
CGCATGGGCG ATGCCTCCGC CTGCGGCGGC GCCATGGCCG GCGCGGTGAT TCCCAACGTG
CTGATCAACG GCAAGCCGGC GGCGGTAGTG GGCAGTGTGG GCAGTCATGG CAATACCGTG
GTGGCTGGCT CCGGCACCGT GTTGATCGGC GCGAGTGGCG GTGGGGCGGC GTTCAGCCCG
GTTGCGCCGC TGTCGCTGGT GGCTGCTGCA GCTAGCGTCA TCAATGTTCT GGTGCCTCCG
GCTCAAGCGG CCGAAGAGCG CGCGCTGGAT TACACCATTG CTTTGCAGCG TGGAGGCAAT
CGTGTGCTCA CGCCTCTGCG GATTCCCGAT TACGAGGAAA TTGGACAAGG CACAACGAAC
AATCGAGAGA CCATCGATTT CCAGATCCGT AACCGCAAAC AGCCGGCCGA TAGCCTGACC
CTGGAGGTAT ACGATGGCGA GACGCTGCTC CATAGCGAAG CGGATACAGC GGCGCTGCTT
CCGACAGGTG AGCACCAGTG GCAGTGGGAC GGCTACGACC GATCTGGCGT TCTCGATACT
CGTGTTTTGA AAAGCCCCAA CCTGCTTGTG CGTCTGACCG TGAAGAAAGG TGCTGAAGAG
CAGGTATCGG AGCTGCGGCT GGACAATAGC GCTGCAGCCG CACCGTGGGT CGATGCCCGC
GTTGATCGCA ACGCTGGCTC CGTCGAGATC ACCCTGCGCC CCAGCTTCTC TGATGGTGGT
GTATCCGGCA GGAACAACCA ATTGACGGCC CGCACATTCG ATGAACTGAA GGTATTGGCC
AAGGCGGGGG TCGAATACTA CTGGTCGCGT GAGGGCAGTC GTGCAGGCGG CATCGACAAG
CCGATTCAGA CAGCCAAAGG CGCGTTTCAG GTGAAGGTCA TCGCTGATGT GAATGCCAAG
CCCAGCGCCA AGAATTTCCC GCTCATTGCT TCAATCGGTG ATGACTTCGG TCGTTCCACT
AGTTTCGCGA TGTTCAAAAA GATTTACCAC AACTTGGGCA TGTGGGCGGC TGCCAACTAT
CCCGCCAATT TTGCCGATGA GGATTTCGCG CACACCGCTG CGCATGAGGT GGGTCACCTC
ATCCTCAACG AGTACGGCGA TGGTGGCTTG ATACCTGCGT ACTCGTGGAG CCACAAGTCG
ACCTCCACGA TCCTCACTCA GGCGCCTGTG GACAATCACC CCATTCCAGC GGCAGGGGAG
ATAGACCTTA TGCATTACCA CTCCCACAGC CCACGCAACT ACCAGGACTA TTGGCAGCGT
TCCATCGCCT CGGAGAACGA CGTCAAGGGC CTGTTGTGGC TTACCCGGGT GAAATTCGAT
GACTAA
|
|---|
| Protein sequence | MSGKPAARLG DPTACPIPGH GTNPIAAGSP DVLFDSLPAA RMGDASACGG AMAGAVIPNV
LINGKPAAVV GSVGSHGNTV VAGSGTVLIG ASGGGAAFSP VAPLSLVAAA ASVINVLVPP
AQAAEERALD YTIALQRGGN RVLTPLRIPD YEEIGQGTTN NRETIDFQIR NRKQPADSLT
LEVYDGETLL HSEADTAALL PTGEHQWQWD GYDRSGVLDT RVLKSPNLLV RLTVKKGAEE
QVSELRLDNS AAAAPWVDAR VDRNAGSVEI TLRPSFSDGG VSGRNNQLTA RTFDELKVLA
KAGVEYYWSR EGSRAGGIDK PIQTAKGAFQ VKVIADVNAK PSAKNFPLIA SIGDDFGRST
SFAMFKKIYH NLGMWAAANY PANFADEDFA HTAAHEVGHL ILNEYGDGGL IPAYSWSHKS
TSTILTQAPV DNHPIPAAGE IDLMHYHSHS PRNYQDYWQR SIASENDVKG LLWLTRVKFD
D
|
|---|
| |