| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0089 |
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| Symbol | |
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| ID | 5106274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 84279 |
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| End bp | 85841 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640501305 |
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| Product | ImpA domain-containing protein |
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| Protein accession | YP_001185595 |
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| Protein GI | 146305130 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3515] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03362] type VI secretion-associated protein, VC_A0119 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTACT CCAGCAAGCT CACCGCTCAT TATCTCAATC TGGCTAAATC CCCTATTAAT
GAAGGGAACT TCGCCGGTGA AGACGTGCGT TATTCCAGCG AATACGAAAT GCTGGAAACC
GAGCTGGGCA AGGCCTCCTC GCTGCATGAA ACCGGCGCCA TCGACTGGCA GAAGGTGCGC
GAGGGCAGCG AGAACCTGCT GACCACCCAA TCCAAGGATC TGCGCGCCGC CACCTGGCTG
ACCTGGGGCC TGTTCCAGCG CGAATCCTTC GCCGGCCTGC AGGCCGGTCT GAACCTGCTG
CACTACCTCT GCGAACACCA CTGGCACGAG CTGCACCCGC GCAAGGCGCG GACCCGCACC
GCCGCCATCA ACTGGCTGCT GCCGCGCCTG GAACAGGCGC TGGCCGAACA CGTGCCGATC
AGCGAGCAGC TGCCGCTGTT TCGCCGTCTG GCCGAACACC TGCACGGTCT GGAAGCCGCC
CTGTCGAGCC ACCTCGGCGA GGACTCGCCG CTGCTGCTGC CGTTGTGCCG CCGCCTCGAC
GAGCAGATCA AGCGGGCCAG CCAGGGCCAG GCCGAGCCGG GCGCAGTCGG CGCCGCCATT
GCCCAGGTCA AGCAGGTCGC CACCCAGATC ATCACCGGCA GCGGTCCCAT CGAAAGCGAG
AAGGATGCCC ACAAGGCCCT GCGCAGCCAG CAGGACGCCG CCCGCCCGCT GTGCGCCTGG
TGGCTGAAGA ACAAGGCCAC CGACCTCAAG CCGCTGCGCC TGGCGCGTAC CCTGCTGTGG
CTGCCCATCG AGTCGCTGCC CGAGCGCAAC GCCGAACAGA TCACCGCCCT GCGCGGCCTG
CCGGCCGACA AGCTGGCCTC CTACAAGGAA CGTTTCGCCC AGGGCGCCTA CGCCGACCTG
CTCGCCGATC TGGAAGCCAG CATCGCCCGC GCGCCGTTCT GGCTCGATGG CCAGCGCCTG
GTCTGGGAAT GCCTGCAGGA GCTCAAGGCC GAGCAGGCCA TGCGCGAAGT GGAAATCCAG
CTCGCCCTGT TCCTGCAGCG CGTGCCCGGC CTCGACGAGC TGCGCTTCCA TGACGGCGTG
CCCTTCGCCG ATGCCGAGAC CCGTGCCTGG ATCGGTGCCC ATGTGCTGCC GCACCTGCAG
GCCCCGGAAG TGGAGAAGAA GCCTGCCGCC AGCGAGCAGG GCGCCACGCC GCCCTGGGAA
GAGGCGCTGC AGCAGGTGCT GCCCGGCCTG CGCAAGGACG GCCTGAAGGC CGCCGTGCAG
CAGCTCAAGC AGGGCATGTC GCGCGCCCGT GGCGGCCGCG AACGCTTCTT CTGGCAACTG
ACCCTGGCCC GCCTGTGCTT CGCCGCGAAG AAGTACGACC TGGCCAAGAC CCAACTCGAA
TCGCTCGACC AGACGCTGCA GGCCGCCGGC CTCGGCGAGT GGGAACCCGA TCTCGCCCTG
GACGTGCTGC GCCTGCTGCA CCACTGCTGC GAGCTGCTGC CGCAGAACCA TGCGGTGCGC
GACAGCAAGG ACGAGATCTA TCGCAGGTTG TGCCACCTCG ATCTCGAGGT GGTGCTGGAG
TAA
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| Protein sequence | MTYSSKLTAH YLNLAKSPIN EGNFAGEDVR YSSEYEMLET ELGKASSLHE TGAIDWQKVR
EGSENLLTTQ SKDLRAATWL TWGLFQRESF AGLQAGLNLL HYLCEHHWHE LHPRKARTRT
AAINWLLPRL EQALAEHVPI SEQLPLFRRL AEHLHGLEAA LSSHLGEDSP LLLPLCRRLD
EQIKRASQGQ AEPGAVGAAI AQVKQVATQI ITGSGPIESE KDAHKALRSQ QDAARPLCAW
WLKNKATDLK PLRLARTLLW LPIESLPERN AEQITALRGL PADKLASYKE RFAQGAYADL
LADLEASIAR APFWLDGQRL VWECLQELKA EQAMREVEIQ LALFLQRVPG LDELRFHDGV
PFADAETRAW IGAHVLPHLQ APEVEKKPAA SEQGATPPWE EALQQVLPGL RKDGLKAAVQ
QLKQGMSRAR GGRERFFWQL TLARLCFAAK KYDLAKTQLE SLDQTLQAAG LGEWEPDLAL
DVLRLLHHCC ELLPQNHAVR DSKDEIYRRL CHLDLEVVLE
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