| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0085 |
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| Symbol | |
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| ID | 5106270 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 79640 |
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| End bp | 80740 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640501301 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_001185591 |
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| Protein GI | 146305126 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGTC GCGACATACT CGCCGCAGCC GGTGTTGGCC TGGCAGCCAC CGCACTGGTG
GGCTGCAAAG AAGAGGCAAA AAGCGCCGCT GCGCCCCAAG AGGGCTCGAG TTCCCAGACC
TTCAACTGGA AGATGGTCAC CTCCTGGCCG AAGAACTTCC CAGGCGTCGG CGTCGGCGCC
GAGCGCTTCG CCAAGCTCGT CGAGGAGATG AGCAACGGCC GTCTGAAGAT CAAGGTCTAC
GCCGCCGGCG AGCTGGTTCC GGCGCTGGAA GTGTTCGATG CAGTCTCCCG CGGCACCGCC
GAAATGGGTC ACGGCGCGCC GTACTACTGG AAGGGCAAGG TCCCGGCCGC GCAATTCTTC
TGCGCCTCGC CGTTCGGTCC CAACGCCCAG GAAATGAACG CCTGGCTGCA CCGCGGCGGC
GGTCAGCAGC TGTGGGAAGA GGTGTACAAG CCGTTCGGCG TCCTGCCCAT GGCCTGCGGC
AACACCGGCG TGCAGACCGC CGGCTGGTTC AACAAGGAAA TCAACTCGGT CGACGACTTC
AAGGGCCTGA AGATGCGCAC CCCCGGCCTG GGCGGCGAAG TGCTGACCAA GATGGGCGGT
ACCGTGGTCA ACATGCCGGC CGGCGAGATC TTCACTGCCA TGCAGACCGG CGCCATCGAC
GCCACCGAGT GGATCGGCCC GTACAACGAC CTGGCCCTGG GTCTGCACAA GGCTGCCAAG
TACTACTACA CCCCGGGCTG GCAAGAGCCG AGCGTACTGT TCGAGCTGGA CGTCAACCTC
AAGGCCTGGG ACACCCTGCC GGCCGACCTC AAGGCCATCG TTCGTGCCGC CGCTCGCGAC
GTCAACGGCG ACATGCTCGA CGACTACAAC GCCAAGAACA TGGAAGCCAT GGAACAGCTC
AAGGCCGATG GCGTGGAAGT CCGCCGCCTG CCGGACGAAG TCCTGGCCCG CCTGAAGGAA
GTGGCAGCCG AGGTGGTCGA TGCCAGCGCC GCGGCCGACC CGGCAGCGAG CAAGGTCTGG
GAACACCAGA AGGCCTACCT CAAGCGCCTG TACGAATACG CCGAAAGCAA CGAGAAGGAC
ATCTACAACA TCCGCGGCTG A
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| Protein sequence | MKRRDILAAA GVGLAATALV GCKEEAKSAA APQEGSSSQT FNWKMVTSWP KNFPGVGVGA
ERFAKLVEEM SNGRLKIKVY AAGELVPALE VFDAVSRGTA EMGHGAPYYW KGKVPAAQFF
CASPFGPNAQ EMNAWLHRGG GQQLWEEVYK PFGVLPMACG NTGVQTAGWF NKEINSVDDF
KGLKMRTPGL GGEVLTKMGG TVVNMPAGEI FTAMQTGAID ATEWIGPYND LALGLHKAAK
YYYTPGWQEP SVLFELDVNL KAWDTLPADL KAIVRAAARD VNGDMLDDYN AKNMEAMEQL
KADGVEVRRL PDEVLARLKE VAAEVVDASA AADPAASKVW EHQKAYLKRL YEYAESNEKD
IYNIRG
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