Gene Pmen_0061 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0061 
SymbolaroE 
ID5106246 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp57317 
End bp58138 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content69% 
IMG OID640501277 
Productshikimate 5-dehydrogenase 
Protein accessionYP_001185567 
Protein GI146305102 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0169] Shikimate 5-dehydrogenase 
TIGRFAM ID[TIGR00507] shikimate 5-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCGCT ACTGCGTCTT CGGCAACCCC ATCGGCCACA GCAAATCGCC GCTGATCCAC 
CGTCTGTTCG CCGAGCAGAC CGGCCAGGTG CTGACCTACG AAGCGCGGCT GGCGCCGCTG
GACGATTTCA TCGGTGACGC GCGCGCCTTC TTCGCCGAGG GGCTGGGCGC CAACGTCACC
GTACCGTTCA AGGAAGAGGC CTTTCGCCTG GCCGACGAGC TGAGCGAGCG CGCCCGCCGC
GCGGGCGCGG TGAACACCCT GAAGAAGCTG GAAGGTGGCC GCCTGCTCGG TGACAACACC
GACGGTGCCG GATTGACCCG CGACCTGCAG GACAATGCCG GCTTCGCCCT GACCGGCAAG
CGCATCCTCG TGCTCGGGGC CGGCGGCGCC GTGCGCGGCG TGCTCGAACC CTTCCTGGCG
CAGAAGCCGG CCGTGCTGGT GATCGCCAAC CGCACCGTGG CCAAGGCCGA GCAGCTGGTG
CGCGAATTCG CCGACCTCGG CCCGCTGGTC GCTGCCGGTT TCGACTGGCT CGACGCGCCG
GTGGACCTGA TCGTCAACGG TACCTCGGCC AGCCTCGGTG GCGAGCTGCC GCCGATCGCA
CCGAGCCTGA TCCAGCCGGG CCATACGCTT TGCTACGACA TGATGTATGG CAAGGAGCCC
ACCGCCTTCA ACCGCTGGGC CTTTGATCAG GGCGCGGCGC GCTGCCTGGA CGGCCTCGGC
ATGCTGGTCG AGCAGGCCGC CGAAGCATTC GAGCTATGGC GCGGCGTGCG CCCGAACACC
GCGCCGGTGC TGGCCGAATT GCGCCGCCAG CTGGCGGGCT GA
 
Protein sequence
MDRYCVFGNP IGHSKSPLIH RLFAEQTGQV LTYEARLAPL DDFIGDARAF FAEGLGANVT 
VPFKEEAFRL ADELSERARR AGAVNTLKKL EGGRLLGDNT DGAGLTRDLQ DNAGFALTGK
RILVLGAGGA VRGVLEPFLA QKPAVLVIAN RTVAKAEQLV REFADLGPLV AAGFDWLDAP
VDLIVNGTSA SLGGELPPIA PSLIQPGHTL CYDMMYGKEP TAFNRWAFDQ GAARCLDGLG
MLVEQAAEAF ELWRGVRPNT APVLAELRRQ LAG