| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0056 |
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| Symbol | |
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| ID | 5106241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 52207 |
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| End bp | 53244 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640501272 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_001185562 |
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| Protein GI | 146305097 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGAAAT CACTACTCGC CCTGCTCTTT GCAGCTGGCG GACTGGCCCT GACCAGCTTG
GCTCAGGCCG AAGTGCAACT CAAGGACGGT CACCCGGACC GCTACACCGT GGTCAAGGGC
GATACCCTCT GGGACATTTC CGGCAAGTTC CTGCGTCAGC CGTGGAAGTG GCCGGAGATC
TGGCACGCCA ACCCACAGGT GGCCAACCCG CATCTGATCT ACCCTGGGGA CACTCTCAAT
CTGGTCTATG TCGACGGCCA GCCACGCCTG ATGCTCAACC GCGGCGAGTC GCGCGGTACC
ATCAAGCTGT CGCCGCAGGT GCGCAGCACG CCGATGGCCG AGGCGATCCC GACCATTCCG
CTGGAGGCGA TCAACAGCTT CCTGCTGAGC AACCGCATCG TCGATACCCC GGAAGAGTTC
AACGGCAAGC CCTACATCGT CGCCGGCAAC GCCGAGCGTG TGGTCAGTGG CGCCGGTGAC
CGCGTCTACG CTCGCGGCCA GTTCGACGAA CAGCATCCGA TCTACGGCAT CTTCCGTCAG
GGCAAGACCT ACGTGGATCC GGAAACCAAG GAATTCCTCG GCATCAACGC CGATGACATC
GGCTCCGGCG AGATCGTCGC CGAGGAAGGC GATGTCGGGA CCCTGCTGCT GAAGCGCTCG
ACTCAGGAAG TACGCCTGGG TGACCGCCTG TTCCCCACCG AAGAGCGGGC GATCAACTCC
ACCTTCATGC CCAGCGAGCC GGCGGGCGAG ATCAAGGGTC TGATCCTCGA CGTGCCGCGT
GGTGTGAGCC AGATCGGACA GTTCGACGTG GTCACCTTGA ACAAGGGCGC GCGCGACGGC
CTGGAAATCG GCAACGTGCT GGCGGTGTAC AAGACCGGCG AGACCGTACG CGACCGCGTC
ACTGGCGAGA GCGTGAAGAT TCCGGATGAA CGCTCCGGTC TGCTGATGGT GTTCCGCACC
TACGACAAGC TCAGCTACGG CCTGGTGCTG CAGGCCAGCC GGCAGCTGGC GGTGATGGAC
AAGGTCCGCA ACCCGTAA
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| Protein sequence | MRKSLLALLF AAGGLALTSL AQAEVQLKDG HPDRYTVVKG DTLWDISGKF LRQPWKWPEI
WHANPQVANP HLIYPGDTLN LVYVDGQPRL MLNRGESRGT IKLSPQVRST PMAEAIPTIP
LEAINSFLLS NRIVDTPEEF NGKPYIVAGN AERVVSGAGD RVYARGQFDE QHPIYGIFRQ
GKTYVDPETK EFLGINADDI GSGEIVAEEG DVGTLLLKRS TQEVRLGDRL FPTEERAINS
TFMPSEPAGE IKGLILDVPR GVSQIGQFDV VTLNKGARDG LEIGNVLAVY KTGETVRDRV
TGESVKIPDE RSGLLMVFRT YDKLSYGLVL QASRQLAVMD KVRNP
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