| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0055 |
|---|
| Symbol | def |
|---|
| ID | 5106240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 51547 |
|---|
| End bp | 52053 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640501271 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_001185561 |
|---|
| Protein GI | 146305096 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATCC TGAATATCCT CGAATTTCCT GATCCACGCC TGCGTACCAT CGCCAAACCG
GTGGACGTCG TGGACGACTC CATCCGTCAG CTGGTCGACG ACATGTTCGA GACCATGTAT
GACGCACCCG GTATCGGCCT GGCCGCGACG CAGGTCAACG TGCACAAGCG CGTGGTGGTC
ATGGATTTAT CCGAGGACAA GTCCGAACCG CGGGTGTTCA TCAATCCCGA GTTCGAATCG
CTGACCGATG AGATGGACCA GTATCAGGAA GGCTGCCTGT CGGTGCCCGG CTTCTACGAG
AACGTCGATC GCCCGCAGAA GGTCAAGATC AAGGCGCTGG ACCGCGATGG CCAGCCCTTC
GAACTGATCG CCGAAGGCCT GCTCGCCGTG TGCATCCAGC ACGAATGCGA TCACCTCAAC
GGCAAGCTGT TCGTCGACTA CCTGTCCAAC CTCAAGCGCG ACCGGATTAA GAAGAAGCTG
GAAAAACAGC ATCGCCAACG CGCTTGA
|
|---|
| Protein sequence | MAILNILEFP DPRLRTIAKP VDVVDDSIRQ LVDDMFETMY DAPGIGLAAT QVNVHKRVVV
MDLSEDKSEP RVFINPEFES LTDEMDQYQE GCLSVPGFYE NVDRPQKVKI KALDRDGQPF
ELIAEGLLAV CIQHECDHLN GKLFVDYLSN LKRDRIKKKL EKQHRQRA
|
|---|
| |