| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0039 |
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| Symbol | |
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| ID | 5106713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 37328 |
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| End bp | 39412 |
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| Gene Length | 2085 bp |
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| Protein Length | 694 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640501255 |
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| Product | HrcV family type III secretion protein |
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| Protein accession | YP_001185545 |
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| Protein GI | 146305080 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4789] Type III secretory pathway, component EscV |
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| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAGCGG TCATCGATTT TCTGAACGGT ATCGCGCTGG CTGCCATGCG CCGCTCGGAG
ATCGTCGGCG CCTTCGTGGT CATCGCCATC ATCTTCATGA TGATCACGCC GATGCCCACG
GAGCTGATGG ATGTGCTGAT CGCGATCAAT ATCTGCATTT CCTGCCTGAT GATCATGCTG
GCCATGCATC TGCCCCGGCC CCTGGCGTTC TCGACGTTTC CGGCGGTGCT GCTGCTGACC
ACCATGTTTC GCCTGGCCCT GTCGATCTCC ACCACGCGCC TGATCCTGCT CGAGCAGGAC
GCCGGGCACA TCGTCGAGGC ATTCGGCGAG TTCGTCGTGG GTGGCAACCT GGCCGTCGGC
GTGGTGATAT TCCTGATCCT GACCATCGTC AACTTCCTCG TCATCACCAA GGGCTCGGAG
CGGGTGGCGG AGGTCGGCGC GCGCTTTACC CTGGACGCCA TGCCCGGCAA GCAGATGTCC
ATCGACAGCG ATCTGCGCGC CAACCTCATT TCGGTGAGCG AGGCGCGTAA CCGCCGGGCC
GAACTGAACA AGGAAAGCCA GCTGTTCGGC GCCATGGATG GGGCGATGAA GTTCGTTAAC
GGCGATGCGA TCGCCAGCCT GATCATCATC GCCATCAACA TGATCGGCGG TATGGCCATC
GGCGTGGCGC AAATGGGGAT GAGCGCGGGC GATGCCTTGC AGGTGTACAC CATCCTCACC
ATTGGTGATG GCCTGGTTTC GCAGATCCCG GCGCTGATGA TTTCTGTCAC CGCCGGTATC
GTCATCACCC GGGTGCCCAA CGAGCAGAGG CAGCAGACCA ACATCGGCCG GGAGATCGCC
GAGCAGCTGA CCAGTCAGCC CAAGGCCTGG ATCATCGCCT CGGTGGCCAT GCTCGGTTTC
GCCGCATTGC CGGGCATGCC CACCCTGACC TTCATCATCA TCGCCATCAT CTGTGGTTGC
GGCGGCTTGT TGCAGTTGCA ACGTGCGCGT ACTTCCAGTG CGGCGGAGGA TGATCCGGAA
GTCATCCCTC CGGAGATGAA TGGTCAGGAG GACCTGCGTA CCTTCTCGCC AAGTCGTCAG
TTCGTGCTGC AATTTCATCC CAGCCAGGAT GCGCATCAGG TCGCGGCCCT GCTCAGCGAG
ATTCGCCAGC GGCGCAACAG GCTGGTGGTG CAGTACGGCC TCACGTTGCC CTCGTTCATC
ATCGAACAAT CGCCGCTCCT GCCTCCGGAC GAATTCCGTT TCTCGGTTTA CGAGGTGCCT
CTGTTCAAGG CCACGCTGAC GCAAAGCCAG TTGGCCGTGC CCGCACGCAG TCTGCCACCG
GGGGCTGTTT GCGGTTCCAA CGAGCGTCAG GAGGAAGACT GGGTATGGAT GCCGGCCGAT
GATCCCATGC TGCAGAACGA CGAGTTGGAG ATCGTCAGCG CCGCGACGCT GATCGTCGAG
CGCATGGAGC GTGCCATGCA GGCCTGCGGG CCGCAGTTCA TCGGCTTACA GGAAACCAAG
GCGATCCTCG GCTGGCTGGA ATCGGAGCAG CCCGAGCTTG CCCAGGAAAT GCAGCGGGTA
CTGCCCTTGG CCAGGTTTTC CGCGATTCTC CAGCGTCTGG CCGCCGAATG CGTGCCGCTG
CGCTCCGTTC GCCTGATCGC GGAGACCCTG ATCGAGCACG CCCAGCACGA GCGAGATGTG
ACTGTGCTGA CCGACTACGT ACGCATCGCC CTCAAGTCGC AGATCTACCA CCAGTACTCG
AGCGCGGAGG GCTTGCTGGT GTGGCTGCTG ACCCCGGAAA GCGAAGGCAT CCTGCGTGAC
GGCTTGCGTC AGACCCAGAC CGAGACCTTC TTCGCCCTGA ACCATGAAAC CAGCCAGCTA
CTGCTGCAAC AACTGCACAT GGCCTTTCCG ATGCGGGCGC CTGAGCAGGC GGTGCTGCTG
GTGCCGCAGG ATCTGCGCAG CCCACTGCGC ACGCTGCTGC AGGAGGAGTT TCACCATGTG
CCGGTGCTGT CCTTCGCTGA AATCAGCAGC GCTGCTCGGA TCAAGGTAAT GGGTCGATTC
GACCTGGAAG AGTCGGTGGC GCTGGACAAT GACTACGCCG CTTGA
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| Protein sequence | MGAVIDFLNG IALAAMRRSE IVGAFVVIAI IFMMITPMPT ELMDVLIAIN ICISCLMIML
AMHLPRPLAF STFPAVLLLT TMFRLALSIS TTRLILLEQD AGHIVEAFGE FVVGGNLAVG
VVIFLILTIV NFLVITKGSE RVAEVGARFT LDAMPGKQMS IDSDLRANLI SVSEARNRRA
ELNKESQLFG AMDGAMKFVN GDAIASLIII AINMIGGMAI GVAQMGMSAG DALQVYTILT
IGDGLVSQIP ALMISVTAGI VITRVPNEQR QQTNIGREIA EQLTSQPKAW IIASVAMLGF
AALPGMPTLT FIIIAIICGC GGLLQLQRAR TSSAAEDDPE VIPPEMNGQE DLRTFSPSRQ
FVLQFHPSQD AHQVAALLSE IRQRRNRLVV QYGLTLPSFI IEQSPLLPPD EFRFSVYEVP
LFKATLTQSQ LAVPARSLPP GAVCGSNERQ EEDWVWMPAD DPMLQNDELE IVSAATLIVE
RMERAMQACG PQFIGLQETK AILGWLESEQ PELAQEMQRV LPLARFSAIL QRLAAECVPL
RSVRLIAETL IEHAQHERDV TVLTDYVRIA LKSQIYHQYS SAEGLLVWLL TPESEGILRD
GLRQTQTETF FALNHETSQL LLQQLHMAFP MRAPEQAVLL VPQDLRSPLR TLLQEEFHHV
PVLSFAEISS AARIKVMGRF DLEESVALDN DYAA
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