| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0023 |
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| Symbol | |
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| ID | 5106698 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 23528 |
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| End bp | 25618 |
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| Gene Length | 2091 bp |
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| Protein Length | 696 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640501240 |
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| Product | YscC/HrcC family type III secretion outer membrane protein |
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| Protein accession | YP_001185530 |
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| Protein GI | 146305065 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAATA CCCTGATATC GCTGTCGTGG TTGTTATGGC TCGTGTCCAT ACCGGCGCAC
GCCGTGCCAC CCGAGAGCTG GAAACAGACC GCCTATGCCT ACGATGCCCG GCAAACCGAC
CTGAACTCGG CGTTGGCGGA CTTCGCCCGG GAGTTCGGTC TATCGCTGGA CATGCCGCCC
ATGGATGGCA TCGTCGACGG TCGTATCCGC GCCAGCAACC CGCAGGAATT TCTCGAACGA
CTCGGGCGTG AATACCAGTT CCAATGGTTC GTTTACAACG AAACGCTCTA CATCAGCCCC
ACCCGCGAAC AGACGTCGGC CCGCATCGAG GTCTCGCCGG ATGCCGTCGA TGACCTGGAA
AACGCACTGA CCGCCATCGG CCTGCTCGAC CCGCGTTTCG GCTGGGGCAC GCTACCCGAA
GAAGGCCTGG TGCTGGTTCG CGGCCCGGCC CAGTACGTAC AGTTCATTCG CGAATACAGC
CAGAAGGTCG AAGAACCGGA GAAAGCGGAA AAACAGGACG TCATCGTCTT CACCCTGAAG
TATGCCAACG CGGCTGATCG CTCCATTCGT TATCGTGATC AGGAGCTGCG TGTAGCAGGT
GTGGCCAGCA TCCTTCGCGA ACTGCTGGAA ACCCGGTCAC GGGGTGAACC CATCAGCGGC
GTGGGCATTT TCCAACCATC CGGTACGACC CAAGGCCTGG CGCCAACCCG CCCGATGGGG
TTGCCTTACG CTGGGATGAG CGGCCTGGAT GGCGGCCTCC TCGAGCAGGG ACTCGACAAT
GTACTGGGGC TGGCTCAGTC CTCTTCGCGC AAGCGCAGTG AAAGCCGCAG CCGCTCGCAG
ATCCGCGTCA GCGCCGACGT GCGCAACAAC GCCGTCCTGA TCTATGACCT GCCAGAGCGC
AAGGCCATCT ATCAGGGCCT CATCCAGCAA CTGGACGTGC CGCGCAACCT GATCGAGATC
GATGCCGTGA TTCTCGATAT CGACCGTAAC GAGCTGGCCG AACTGTCCAG CCGCTGGGCC
TTCAACTCCG GCAGCGTCAG CGGCGGCGCC AACCTGTTCG AACCCGGTAC CACGTCGACG
CTGTTCATCC AGGATGCCGG TCGGTTCGCC GCGGAATTGC GTGCACTGGA GGGAACCGGG
GCCGCCTCGA TCATGGGCAA CCCCTCGATC CTGACCCTGG AAAACCAGCC CGCGGTCATC
GACTTCAGCC GCACCGAGTA CCTGACGGCG CTGGCCGAGC GCGTTGCCAA TATCCAACCC
ATCACCGCCG GCACCAGCCT GCAGGTGATC CCGAGGTCAC TGAATCAGGG CAGCCGCTCC
CAGGTCCAGC TGATCGTCGA CATCGAAGAC GGACAGATCA TCGAGTCGAA CATCTCCGAG
GAGCAGCCGT CGGTACGCCG TGGCAATGTC AGCACCCAGG CAGTGATCGC CGAGCATGGC
TCGCTGGTGA TCGGCGGTTT CCACAGTCTC GAAGCCAACG ACAGGATCAA CAAGATTCCC
TTGCTCGGCG ATATCCCGGT CATCGGTAAA TTGCTGTTCC AGTCACGCAA TCGCGAATTC
AACCGGCGTG AGCGCTTGTT CATCCTCACC CCTCGTCTGA TCGGAGATCA GGTGAACCCT
GCGCGCTACG TGCAACATGG CAATCCGCAT AACCTGGACC GGCAACTTCG CGAGATCGAC
GAGCGCCGCC GGGGTACCGA ACGCCCGAGT CGGGGCGACA TCGAACATGC CTTCACCCAG
CTGCTCGATG GCATACACCC CTCCGGGTTC GACAGCGCAC CCTTGCCGCT CAGGGCAGAA
ACGCTCTGCA ACTCGGATCA CGGACTGACG CTGGATGCCG AACGCTCCCA GTGGTTCGCC
CGCGATGGTT GGGGTGTAGC AGTGGTCGTG GCACGTAACG ACACGGCACA ACCGATACGC
ATCGATGAGA GCCGCTGTGG GGGACGCTGG GCCATGGGGG TCAGTGCCTG GCCACGCGCC
TGGCTCCAGC CTGGCGAGGA GAGCGAAGTG TTCATTGCCC TGCGCCAGCC GCAATCGCTG
CAAAAAACCG GACAAGGCCG AACTTCATTG CTGCACAGGA GCACCCCTTG A
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| Protein sequence | MRNTLISLSW LLWLVSIPAH AVPPESWKQT AYAYDARQTD LNSALADFAR EFGLSLDMPP
MDGIVDGRIR ASNPQEFLER LGREYQFQWF VYNETLYISP TREQTSARIE VSPDAVDDLE
NALTAIGLLD PRFGWGTLPE EGLVLVRGPA QYVQFIREYS QKVEEPEKAE KQDVIVFTLK
YANAADRSIR YRDQELRVAG VASILRELLE TRSRGEPISG VGIFQPSGTT QGLAPTRPMG
LPYAGMSGLD GGLLEQGLDN VLGLAQSSSR KRSESRSRSQ IRVSADVRNN AVLIYDLPER
KAIYQGLIQQ LDVPRNLIEI DAVILDIDRN ELAELSSRWA FNSGSVSGGA NLFEPGTTST
LFIQDAGRFA AELRALEGTG AASIMGNPSI LTLENQPAVI DFSRTEYLTA LAERVANIQP
ITAGTSLQVI PRSLNQGSRS QVQLIVDIED GQIIESNISE EQPSVRRGNV STQAVIAEHG
SLVIGGFHSL EANDRINKIP LLGDIPVIGK LLFQSRNREF NRRERLFILT PRLIGDQVNP
ARYVQHGNPH NLDRQLREID ERRRGTERPS RGDIEHAFTQ LLDGIHPSGF DSAPLPLRAE
TLCNSDHGLT LDAERSQWFA RDGWGVAVVV ARNDTAQPIR IDESRCGGRW AMGVSAWPRA
WLQPGEESEV FIALRQPQSL QKTGQGRTSL LHRSTP
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