Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0009 |
Symbol | |
ID | 5106684 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 9834 |
End bp | 11588 |
Gene Length | 1755 bp |
Protein Length | 584 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640501226 |
Product | alpha/beta hydrolase fold |
Protein accession | YP_001185516 |
Protein GI | 146305051 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG2267] Lysophospholipase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 68 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCCCG TACAACTGCA TACCTTCACC ACCCATGACG GCGTCGAACT GAGCTATTGC CACTGGCCGG CAACCGTGCC GGCGGACGGC TCACGTCAGG CCGTGGTGCT GTTTCATCGT GGCCACGAGC ACGGCGGGCG CATGGCTCAC CTAGTGGACG AGCTGGAGCT GCCGCACTGC GATTTCTTCG CCTGGGACGC CCGCGGCCAT GGCCTGTCGC CCGGTGCGCG CGGCGACAGC CCGAGCTTCG CCACCAGCGT GCGCGACGTG CAGACCTTTA TCGAGCATAT CGGCAGCGCA CACGGCATCG CCGAAGAGGA CCTGTCGGTG GTGGCGCAAA GCGTCGGCGC GGTGATCGTC TCCACCTGGG CCCATGACTA CGCGCCGAAG GTGCGCTGCC TGGTGCTCGC CTCGCCGGCG TTCAAGGTCA AACTCTACGT GCCCTTCGCC CGGCCCGGGC TGAAGCTGCT GCACGCCTGG CGCGGCAACT TCTTCGTCAA CAGCTACGTG AAGGCGAGGT TCCTCAGCCA CGATCCCGAG CGCATCGCCT CCTTCGAGAA CGACTCGCTG ATCGCCCGGC CGATCTCGGT GACCATGCTG CTCGGCCTGT ACGAGGCCGC CGAGCGCGTC GTCGCCGACG CCCAGGCGAT CCAGGTGCCG ACCCAGCTGC TGATCTCCGG CGCCGACTTC GTCGTCCACC GCAAACCGCA GGAGGACTTC TTCGAGCGTC TCGGCAGCCT GCGCAAGGAA AAACACCTGC TGCCCGGCTT CTTCCACGAC ACCCTTGGCG AGCGCGACCG CGCCCATGCC CTGAGCCGCG CGCGGCGCTT TATCCTGCGC AACTTCGAGG AGCCGGTGAC GCGCCCCTCG CTGCTCGATG CCGATCGCCT GGGCGCCACC TGCGCCGAAG CCGAAGCGCT GGCCGCGCCG CTGCCAAGGA ACTCGCTGCG CGACCTCTAC TGGCGTGCCA CCCGTGCCGG CATGCGCCTG GGCAGTACGC TGTCGGCCGG AGTGAAGCTG GGCTTCGACA CCGGCTTCGA TTCTGGCAGC ACCCTCGATT ACGTCTACCG CAACCAGCCC ACCGGCAAGG GCGCGCTGGG CCGCCTGATC GATGCGAACT ACCTGGATTC CATCGGCTGG CGCGGCATCC GCCAGCGCAA GCTGCACGCC GAGGAACTGC TGCGCCTGGC CATGACCAGG CTGCGTGAGA CGGGCAGGGC GGTGCGCATC GTCGATATCG CCGCCGGCCA CGGCCGCTAC ATCCTCGAAT CGCTGGAAGG CCAGCAGCAG CGCCCAGATT CGATCCTGCT GCGCGACTAC AGCGACATCA ACGTGCGTGA CGGCAATGCC CTGATCGAGC AGAAGGGCCT GGCCGACATC GCCCGCTTCG TCAAAGGCGA TGCCTTCGAC CGTGAGGATC TCGCTGCGCT GGAGCCGAAA CCGACCCTGG CAGTGGTCTC CGGCCTGTAC GAGCTGTTCG GCAGCAACCA GATGGTCGGC GACTCGCTGG CCGGGCTGGC GGCGGCGGTG GAGGAGGGTG GTTATCTGGT CTACACCGGC CAGCCCTGGC ACCCGCAGCT GGAGCTGATC GCCCGCGCCC TGACCAGCCA CCGCGACGGC CAGGCCTGGG TCATGCGCCG GCGCAGCCAG GCGGAGATGG ATCAGCTGGT GGAAGCGGCG GGCTTTCGCA AGGTGGCGCA GCGCATCGAC CAGTGGGGCA TCTTCAGCGT ATCCCTGGCG CAGCGGGTGA AGTGA
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Protein sequence | MRPVQLHTFT THDGVELSYC HWPATVPADG SRQAVVLFHR GHEHGGRMAH LVDELELPHC DFFAWDARGH GLSPGARGDS PSFATSVRDV QTFIEHIGSA HGIAEEDLSV VAQSVGAVIV STWAHDYAPK VRCLVLASPA FKVKLYVPFA RPGLKLLHAW RGNFFVNSYV KARFLSHDPE RIASFENDSL IARPISVTML LGLYEAAERV VADAQAIQVP TQLLISGADF VVHRKPQEDF FERLGSLRKE KHLLPGFFHD TLGERDRAHA LSRARRFILR NFEEPVTRPS LLDADRLGAT CAEAEALAAP LPRNSLRDLY WRATRAGMRL GSTLSAGVKL GFDTGFDSGS TLDYVYRNQP TGKGALGRLI DANYLDSIGW RGIRQRKLHA EELLRLAMTR LRETGRAVRI VDIAAGHGRY ILESLEGQQQ RPDSILLRDY SDINVRDGNA LIEQKGLADI ARFVKGDAFD REDLAALEPK PTLAVVSGLY ELFGSNQMVG DSLAGLAAAV EEGGYLVYTG QPWHPQLELI ARALTSHRDG QAWVMRRRSQ AEMDQLVEAA GFRKVAQRID QWGIFSVSLA QRVK
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