| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_4001 |
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| Symbol | trmE |
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| ID | 5081510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 4655095 |
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| End bp | 4656456 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640501213 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001185503 |
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| Protein GI | 146295079 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.73411 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACAACTG ACACTATCGT GGCTCAAGCC ACCGCACCCG GACGTGGCGG CGTTGGCATC
ATTCGAATTT CAGGTGACAA GGCAACTGAT GTTGCCATGG CAGTTTTAGG TCATTTACCT
AAAACCCGAT ATGCCGATTA TTGTGATTTT AAAAATGCAA CAGGCCAAGT AATAGACCAA
GGCATAGCGC TATTTTTTAA GGGGCCAAAC TCCTTTACCG GTGAAGACGT ATTGGAATTG
CAAGGCCACG GTGGCCAAAT AGTCCTCGAC ATGCTGATCA AACGCGTATT GGAAGTTGAA
GGTATTCGTA TAGCCAAACC CGGTGAATTT AGCGAACAAG CTTTTATGAA TGATAAGCTC
GACTTAACCC AAGCCGAAGC GATTGCCGAT CTTATCGATG CCACCAGCGA GCAGGCCGCC
AAAAGCGCGC TACAATCGCT GCAGGGTGAG TTTTCTAAGG AAGTCCACGA GTTGGTGGAT
CAAGTCACGA ACCTGCGTTT ATACGTTGAA GCCGCAATTG ATTTCCCCGA TGAAGAAGTC
GACTTTTTAA GTGATGGCAA AATTGCCAAT GCACTCTATA AAATCATCGA CAAACTCAGC
ACCGTACAAG CTAGTGCTAA ACAAGGTTCT ATCATTCGTG AAGGCATGAA AGTGGTGATT
GCCGGCCGCC CTAATGCCGG AAAATCCAGT TTATTAAATG CGTTAGCAGG TAAAGAATCG
GCGATTGTCA CCGAAATAGC CGGTACTACT CGCGATGTAC TACGTGAACA TATCCATTTA
GATGGTATGC CATTGCATAT TATTGATACA GCAGGCCTGC GTGATACCAC TGATACCGTT
GAACAAATTG GTATCGAGCG CGCTTGGAAT GAAATCAACA GCGCCGATCG CGTGTTATTT
ATGGTCGATG GCACCACCAC GGATGCTGTC GATCCCCATG ATATTTGGCC AGATTTTATC
AATCGACTGC CCGCTAATTT AGGGGTAACC GTAATCCGCA ATAAAGCCGA TCTTACCGGT
GAAAACCTCG ATATGACGGA AGAAAAAGGT TATAGCGTTT ACCGGATCTC AGCCAAAACA
GGGCTCGGTG TTGATGAGTT AAAACTGCAC TTAAAGTCAC TTATGGGTTA CCAAAGTAAC
TTAGAAGGTG GATTTATCGC ACGCCGCCGT CATCTTGAGG CCTTAGATGT AGCCGCAAGC
CACCTGCAAT TAGGTAAAGA GCAATTAGAG GTTTACCTCG CAGGAGAGCT ATTAGCGGAA
GAGCTCAGAA TGGCACAACT CGCCCTATCT GAAATCACAG GCCGTTTTAC CTCAGACGAT
CTATTGGGCA AAATTTTTAG CTCATTCTGT ATCGGGAAGT AA
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| Protein sequence | MTTDTIVAQA TAPGRGGVGI IRISGDKATD VAMAVLGHLP KTRYADYCDF KNATGQVIDQ
GIALFFKGPN SFTGEDVLEL QGHGGQIVLD MLIKRVLEVE GIRIAKPGEF SEQAFMNDKL
DLTQAEAIAD LIDATSEQAA KSALQSLQGE FSKEVHELVD QVTNLRLYVE AAIDFPDEEV
DFLSDGKIAN ALYKIIDKLS TVQASAKQGS IIREGMKVVI AGRPNAGKSS LLNALAGKES
AIVTEIAGTT RDVLREHIHL DGMPLHIIDT AGLRDTTDTV EQIGIERAWN EINSADRVLF
MVDGTTTDAV DPHDIWPDFI NRLPANLGVT VIRNKADLTG ENLDMTEEKG YSVYRISAKT
GLGVDELKLH LKSLMGYQSN LEGGFIARRR HLEALDVAAS HLQLGKEQLE VYLAGELLAE
ELRMAQLALS EITGRFTSDD LLGKIFSSFC IGK
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