| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_4000 |
|---|
| Symbol | |
|---|
| ID | 5081509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 4653762 |
|---|
| End bp | 4654931 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640501212 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001185502 |
|---|
| Protein GI | 146295078 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA ATATACAAAA ACGAGAACCA GATAAGAATG GCCTGCGCCC CATCAGGCTT
GTGTACTATT ACGGCTCAAA GACCTCGGAA GACGGTTCAA GGGCTCAAAA GCGCTCTTAC
GAACCGCTGA ATCTATTCCT CTATAACAAG CCAAAAAACG CAGTTGAGCG CGAGTACAAT
AAGACTACAC TGCAAAAAGC CGAAGCTATT CGTGCCAAAC GCCTGCTAGA AATGGAATCT
GCCAAACATG GCTTGGATGA CAGCACAAAA CTTAATGCCA GCTTCTTTGA CTACTTCGAT
CAAGTAACAG CAAGTAAAGC ATCCGGTAGT AAATCCAACT ACTCAATTTG GGTTTCAGCG
GGCATCCATC TCCACCGTTA TCACCGCCAC GCAGAACTCA CTTTTGAACA GATAGATAAA
TACTTTTTGG AAGGGTTCCG CCATTACCTA CAGCATGAGG CAATAACAAA ATCAGATACC
GGCCTCTCCA GAAATACCGC CTGTAGCTAC TTCAATAAAA TCCGGGCAGC ACTCAACCAA
GCACAACGAG ACCGAATCAT CAGAGATAAC CCTGTTGAAC AAGTCAAATC CATCAAAGCA
GAAAGGACAC AGCGCACTTA TCTCACTCTG GATGAGGTAA AGGCCCTTAC CAAGGCAGAA
TGCCGTTACG ATGTACTACG AAGAGCATTT CTGTTCTCCT GCACGACAGG ACTACGCTGG
TCAGACATTC ATAAACTGGT GTGGGGTGAA ATTGAACTAT TTTCTCAAGG GCACTACCGA
ATAATCTTTT CCCAGATAAA GCTCAAAAAC TCAGGCAATG GCCTGCAATA TCTCGACTTA
CCGGATTCTG CGGTGCGTCT ACTCAACTTG GAGAACAAGG GAAAACCGAC TGAACGGGTT
TTTAAGGGTT TACGTTACGA CAGTTACAGC AACGTCGCGC TAGTGCAGTG GGCCATACGT
GCCGGAATAA CCAAACACGT GACCTTTCAT GCTGGCCGAC ACACCTTTGC AGTAAACCAA
CTTGCCCGTG GCCTGGACAT CTATTCCCTT TCCAGATTGC TTGGCCACAG CGAACTCAGA
ACGACAGAAA TCTACGCAGA TATTCTGGAA ACCCGCCGCA CAGAGGCAAT GCGGACTTTT
CCGGATATTT TCGATGAGTC TTCAGACTGA
|
|---|
| Protein sequence | MKINIQKREP DKNGLRPIRL VYYYGSKTSE DGSRAQKRSY EPLNLFLYNK PKNAVEREYN
KTTLQKAEAI RAKRLLEMES AKHGLDDSTK LNASFFDYFD QVTASKASGS KSNYSIWVSA
GIHLHRYHRH AELTFEQIDK YFLEGFRHYL QHEAITKSDT GLSRNTACSY FNKIRAALNQ
AQRDRIIRDN PVEQVKSIKA ERTQRTYLTL DEVKALTKAE CRYDVLRRAF LFSCTTGLRW
SDIHKLVWGE IELFSQGHYR IIFSQIKLKN SGNGLQYLDL PDSAVRLLNL ENKGKPTERV
FKGLRYDSYS NVALVQWAIR AGITKHVTFH AGRHTFAVNQ LARGLDIYSL SRLLGHSELR
TTEIYADILE TRRTEAMRTF PDIFDESSD
|
|---|
| |