| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3996 |
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| Symbol | |
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| ID | 5081505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 4649579 |
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| End bp | 4650823 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640501208 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_001185498 |
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| Protein GI | 146295074 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAATA ACCACATCCT TTCGTCACTG AGTTTGGCGA TACTGCTCAG TATGGGTATG
AACGCCGTCA TCCCAACACC TGTATTGGCT TCCTCAGCCC CAGTTGCTGA GCAGGCCGAG
CCAGAAAAAG GTCCGCATCG TGGACGTATG CTGCGTGAGG GGAATTTTGC TTTAGAGCTG
TCCATTTTTG AAACGGGTGT CCCTCCAGAG TTTCGAGTGT GGTTGACCTA TGAAGGGAAA
CCACTAGATC CCAAAACTGT TGATTTGAGC GTTAAATTGA CTCGCTTAGG CAATGTCGTG
GATGACATTC GCTTTAACGC GCAAGGGGAT TTCCTCCGTG GTGATATGGA GATCTATGAA
CCCCATTCGT TTGTGGTCAC GATTGAGGCT AAATACCAAG GTAAAACGTA CCTTTGGCAG
TATGACAACT TTGAAGGTCG CACCACGATA GAGCAAGCCG TCGCCACCGC GATGGATATT
CAAACCGATA TTGCAGGTCC AGCCACTTTG CACCAAACAA TCCCTGCCTA TGGCACATTG
GCGCTACCGG TAGAGTCGCA GCGTGCCATC GCCGCTCGCT TTGAAGGAGA AATTACGCAG
TTGTATGTTG GACTGGGTGA CAGGGTAAAA AAAGGCCAAC CCTTGTTAAC CATAGAAAGT
AACGAAAGTT TGAAGCCATA TCAAATCAAA GCGCCATCCG ATGGCGTAGT CACGCAGCAG
TTCGCTAACA GTGGCGAGCA AACCCTTGGC CGTTCGTTGC TGACGCTCAC CGATAACAGT
CATTATATCG CTAAACTGGC GGTATACCCC ATTGATTATC AAAAGGTTAG CATCGGTGCT
GCCGTCACTT TGCAGATAGA GGGCTCGGAT GAGACTTATC AAGGTACTGT TTCATTTATC
GAACCCCAAG TGCGTGATGA TCAAGCCCGT ATCGTGTGGG TAAAACTTGC TAATGAAAAG
GGAGCGTTTA CCTCCGGCAG TTTTGTTCAC GCCAAGATAG AAGTGGCCAC CATTGAGGTG
CCTTTGGCAG TTAAACGAAT TGGATTGCAA GGGTTTCGTG ATTTCACCGT GGTGTTTGCC
AAAGTCGGTG AGCAATATGA AGTGCGTATG CTGGAGCTAG GCCGTCAAGG CGGTGAATGG
GTTGAGGTAC TGGGCGGTTT GAAACCTGGC ACTGAATACG TCACCGAAAA TAGCTATATC
TTAAAAGCCG ACATTGAAAA GTCTGGCGCA TCCCACGATC ACTAG
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| Protein sequence | MKNNHILSSL SLAILLSMGM NAVIPTPVLA SSAPVAEQAE PEKGPHRGRM LREGNFALEL
SIFETGVPPE FRVWLTYEGK PLDPKTVDLS VKLTRLGNVV DDIRFNAQGD FLRGDMEIYE
PHSFVVTIEA KYQGKTYLWQ YDNFEGRTTI EQAVATAMDI QTDIAGPATL HQTIPAYGTL
ALPVESQRAI AARFEGEITQ LYVGLGDRVK KGQPLLTIES NESLKPYQIK APSDGVVTQQ
FANSGEQTLG RSLLTLTDNS HYIAKLAVYP IDYQKVSIGA AVTLQIEGSD ETYQGTVSFI
EPQVRDDQAR IVWVKLANEK GAFTSGSFVH AKIEVATIEV PLAVKRIGLQ GFRDFTVVFA
KVGEQYEVRM LELGRQGGEW VEVLGGLKPG TEYVTENSYI LKADIEKSGA SHDH
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