| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3971 |
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| Symbol | |
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| ID | 5081454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 4620452 |
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| End bp | 4621609 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640501184 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001185474 |
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| Protein GI | 146295050 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACATCA AACAGCGGCA CTTAAGCTTT GTATTAGTTG TAGGAATTGC CGTGTTGGGA
TTGGTAGGTT GTGATTCAGC GGTACAGGAT GAAGAAACAT CTGCTCCGGT TCAAGTGTCA
GTAATGACAT TAAAAAATGA AGAACTATTG GTGACTAAAG ATCTGCCCGG TCGTGTCGCT
GCGGTTCGCA GCGCTGAGAT CCGCGCGCAA ATTAGCGGCA TAGTGCAAGG TCGCCTCTTC
GAACAGGGCG CCGAGATAAC ATCTGGCACT GTGCTGTTCC AAATAAATCC AGCACCATTT
AAAGCGGATG TCGATATTGC TGCGGCAGCG TTACTGCGTG CCGAAGCGGT ATGGGTTCGG
GCTCGTCAAG AAGCCGATCG CTTGGCCTCT TTGATACAAA CCGAGGCCGT CAGCCAACAA
ATGTATGACG ATGCTATTTC CCAGCGCGAT CAGGCTGCCG CGGATGTAGC CCAAACCAAA
GCGACGCTGG CACGGCGTCA GTTAGATCTA CAGTTTGCCA GCGTCGAGGC ACCAATCTCC
GGACGTATAG ATGAAGCATT AGTGAGTGAA GGTGCATTGG TCTCACCGAC CGATACCACA
CCCATGGCGA GGATCCAACA AATCGACCAA GTGTACGTTG ATGTACGTTT GCCAGCATCA
ATGTTGAAGG CGATGCGTCA GCAGGCCAAC TCTGGAGCCC CGGAGTTGGC TGTTGAGATC
CTTAGCAGTA GTGGCGAGCC TCTTGGCATG CAAGGGCATA TCTTATTTTC CGGCATTCAA
GTAGATGCAG GTACTGGCGA TGTACTGCTG CGCGTACTGG TAGATAACCC GCAGCATCGT
CTGTTACCCG GTCTTTACGT AAAAGCTCGC ATTCCACAAA CTTACTATCC TACGACGCTG
AACGTGCCTC AGCAGGCAGT GACTCGCAAG GCTGGTCAAC CCCAAGTGTG GGTGCTTGAT
GAGCAAGCTA AAGTGCAACC TGTGGCCGTT AAGGTCGATG AATTGGTGGC AGGTCACTAT
CACGTAGTAT CCGGCCTAAG CGCTGGTCAG CAGATAGTTG TTGAAGGCAT CGAACGCCTA
AGCCCTGCGG CGCAGGTCGT CGCGCGCCCT TGGCAACCTA CTACTGCTAA TCAGCAACTT
AGCGCCGTCG TGCGCTAA
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| Protein sequence | MYIKQRHLSF VLVVGIAVLG LVGCDSAVQD EETSAPVQVS VMTLKNEELL VTKDLPGRVA
AVRSAEIRAQ ISGIVQGRLF EQGAEITSGT VLFQINPAPF KADVDIAAAA LLRAEAVWVR
ARQEADRLAS LIQTEAVSQQ MYDDAISQRD QAAADVAQTK ATLARRQLDL QFASVEAPIS
GRIDEALVSE GALVSPTDTT PMARIQQIDQ VYVDVRLPAS MLKAMRQQAN SGAPELAVEI
LSSSGEPLGM QGHILFSGIQ VDAGTGDVLL RVLVDNPQHR LLPGLYVKAR IPQTYYPTTL
NVPQQAVTRK AGQPQVWVLD EQAKVQPVAV KVDELVAGHY HVVSGLSAGQ QIVVEGIERL
SPAAQVVARP WQPTTANQQL SAVVR
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