Gene Sputcn32_3955 details

Gene Information

• Locus tag: Sputcn32_3955
• Symbol: atpC
• ID: 5081438
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella putrefaciens CN-32
• Kingdom: Bacteria
• Replicon accession: NC_009438
• Strand: -
• Start bp: 4603061
• End bp: 4603489
• Gene Length: 429 bp
• Protein Length: 142 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640501169
• Product: F0F1 ATP synthase subunit epsilon
• Protein accession: YP_001185459
• Protein GI: 146295035
• COG category: [C] Energy production and conversion
• COG ID: [COG0355] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)
• TIGRFAM ID: [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria)

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.0052877
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGCCA TGACAGTACA TCTTGATATT GTAAGTGCAG AAAACAGCAT TTTTAAAGGT 
CGAGTAGCAT GTCTACAAGT GACTGGTGTT GAAGGGGAAT TAGGTATTTT ACCTGGTCAC 
GCCCCTCTGC TGACCACTAT CAAACCTGGC ATGGCGCGCA TCATCAAGCA AGATGGCAGT 
GAAGAGGTTA TTTATCTTTC AGGCGGTTTT CTGGAAGTAC AACCCAATTC TATTGCCGTT 
CTCGCGGATG TCGTAATGCG TGCCGATGAA ATTGATGAGC AGGCAGCATT AGAAGCAAAA 
CGCCGTGCAG AAGCCCATAT GGCCGATGCA GGTGCTGATT TTGATTATGA TGCAGCTATG 
GTTGAGTTAG CGAAAGCAAT GGCTCAATTA CGTGTTGTTG AAACCATCAA GAAAAACATT 
GCCAGATAA 

 

Protein sequence

MAAMTVHLDI VSAENSIFKG RVACLQVTGV EGELGILPGH APLLTTIKPG MARIIKQDGS 
EEVIYLSGGF LEVQPNSIAV LADVVMRADE IDEQAALEAK RRAEAHMADA GADFDYDAAM 
VELAKAMAQL RVVETIKKNI AR