Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_3952 |
Symbol | |
ID | 5081435 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 4598146 |
End bp | 4598916 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640501166 |
Product | DeoR family transcriptional regulator |
Protein accession | YP_001185456 |
Protein GI | 146295032 |
COG category | [G] Carbohydrate transport and metabolism [K] Transcription |
COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00923928 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAAAC GAAACACACA GCAGCGTCGC CACAGTATAA TCACCATATT GAACGAACAG GGTGAAGTAA GTGTCGATGA ATTGTCGTTA CGTTTTGAAA CCTCAGAAGT GACGATTCGT AAGGATCTCG CCGCGCTTGA GAAAACGGGT TTATTATTGC GCCGTTACGG TGGCGCCGTG GCGATTCCAG ACGAAGTCAC TCAACAGTTC TCTGCCAAGA TCGCGCCTAA TAAACTTTCT ATTGCGAAAA CTGCCGCGCA GCTGATTAAA GATCACAATC GCATCATTAT CGATAGTGGC ACTACGACGT CAGGTTTGAT TGAACAGTTG AACGATAAGC GTGGGCTGGT GGTGATGACG AATGCGCTGC ACCTTGCCAA TGCCATCCAT GAACTCGAAA ACGAGCCAAC TTTATTGATG ACCGGTGGGA CTTGGGACCC GCATTCTGAA TCCTTTCAAG GCCAAGTCGC CGAGCAAGTG CTGCGTTCCT ATAACTTCGA CCAACTGTTT ATTGGTGCCG ATGGTATCGA TCTTGAACGC GGGACCACCA CCTTTAACGA GTTAACAGGC CTAAGTAAAG TGATGGCCGA AGTTTCCCGC GAAGTGATCG TTATGGTCGA TTCTGACAAA ATCGGCAAGC GGATCCCTAA CTTAGAGTTA CCGTGGGCCA AGGTCAGTGT GTTGGTCACC GACTCACGTA TCGACGAGAG TGCGCTCAAA CAAATTTCAG ATCAGGGCGT GCGAGTTATG TTAGCGCCCT ACGCTCAATA G
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Protein sequence | MNKRNTQQRR HSIITILNEQ GEVSVDELSL RFETSEVTIR KDLAALEKTG LLLRRYGGAV AIPDEVTQQF SAKIAPNKLS IAKTAAQLIK DHNRIIIDSG TTTSGLIEQL NDKRGLVVMT NALHLANAIH ELENEPTLLM TGGTWDPHSE SFQGQVAEQV LRSYNFDQLF IGADGIDLER GTTTFNELTG LSKVMAEVSR EVIVMVDSDK IGKRIPNLEL PWAKVSVLVT DSRIDESALK QISDQGVRVM LAPYAQ
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