Gene Sputcn32_3952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_3952 
Symbol 
ID5081435 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp4598146 
End bp4598916 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content49% 
IMG OID640501166 
ProductDeoR family transcriptional regulator 
Protein accessionYP_001185456 
Protein GI146295032 
COG category[G] Carbohydrate transport and metabolism
[K] Transcription 
COG ID[COG1349] Transcriptional regulators of sugar metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00923928 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAAAC GAAACACACA GCAGCGTCGC CACAGTATAA TCACCATATT GAACGAACAG 
GGTGAAGTAA GTGTCGATGA ATTGTCGTTA CGTTTTGAAA CCTCAGAAGT GACGATTCGT
AAGGATCTCG CCGCGCTTGA GAAAACGGGT TTATTATTGC GCCGTTACGG TGGCGCCGTG
GCGATTCCAG ACGAAGTCAC TCAACAGTTC TCTGCCAAGA TCGCGCCTAA TAAACTTTCT
ATTGCGAAAA CTGCCGCGCA GCTGATTAAA GATCACAATC GCATCATTAT CGATAGTGGC
ACTACGACGT CAGGTTTGAT TGAACAGTTG AACGATAAGC GTGGGCTGGT GGTGATGACG
AATGCGCTGC ACCTTGCCAA TGCCATCCAT GAACTCGAAA ACGAGCCAAC TTTATTGATG
ACCGGTGGGA CTTGGGACCC GCATTCTGAA TCCTTTCAAG GCCAAGTCGC CGAGCAAGTG
CTGCGTTCCT ATAACTTCGA CCAACTGTTT ATTGGTGCCG ATGGTATCGA TCTTGAACGC
GGGACCACCA CCTTTAACGA GTTAACAGGC CTAAGTAAAG TGATGGCCGA AGTTTCCCGC
GAAGTGATCG TTATGGTCGA TTCTGACAAA ATCGGCAAGC GGATCCCTAA CTTAGAGTTA
CCGTGGGCCA AGGTCAGTGT GTTGGTCACC GACTCACGTA TCGACGAGAG TGCGCTCAAA
CAAATTTCAG ATCAGGGCGT GCGAGTTATG TTAGCGCCCT ACGCTCAATA G
 
Protein sequence
MNKRNTQQRR HSIITILNEQ GEVSVDELSL RFETSEVTIR KDLAALEKTG LLLRRYGGAV 
AIPDEVTQQF SAKIAPNKLS IAKTAAQLIK DHNRIIIDSG TTTSGLIEQL NDKRGLVVMT
NALHLANAIH ELENEPTLLM TGGTWDPHSE SFQGQVAEQV LRSYNFDQLF IGADGIDLER
GTTTFNELTG LSKVMAEVSR EVIVMVDSDK IGKRIPNLEL PWAKVSVLVT DSRIDESALK
QISDQGVRVM LAPYAQ