| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3906 |
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| Symbol | |
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| ID | 5081336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 4531281 |
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| End bp | 4534049 |
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| Gene Length | 2769 bp |
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| Protein Length | 922 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640501118 |
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| Product | DNA polymerase I |
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| Protein accession | YP_001185411 |
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| Protein GI | 146294987 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000887796 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTACCA TTGCAAACAA CCCACTTGTC CTTGTGGATG GATCTTCTTA TTTATACCGC
GCCTATTATG CGCCTCCTCA CCTGACAAAC TCAAAGGGCG AAGCAACGGG TGCCGTCTAT
GGCGTAGTAA ATATGTTACG CAGTCTATTG AGCCGTTACC AACCGAGCCA TATCGCCGTC
GTATTCGATG CCAAAGGTAA AACCTTCCGT AATGATATGT ACAGCGAATA CAAAGCACAG
CGCCCACCGA TGCCGGATGA TCTTCGTTCA CAAATCGAAC CTCTGCATAG GATTATTCAC
GCCCTTGGTT TACCCCTTAT CTCTATCCCT GGCGTTGAAG CGGATGATGT TATCGGCACA
ATTGCCCGCC AAGCAAGCCG TGAGAATCGC GCCGTACTCA TTAGTACTGG TGATAAAGAT
ATGGCCCAAT TGGTTGATGA AAATATCACG CTGATCAATA CCATGACAGA TACCATCATG
GGGCCCGATG AAGTTGCAGC AAAATATGGT GTAGGTCCAG ATCGTATTAT TGATTTCTTA
GCCTTGATGG GCGATAAGGC CGATAATATT CCAGGCTTAC CTGGTGTCGG CGAAAAAACG
GCATTAGCTA TGCTGACTGG CGCAGGAAGC GTGGCCAACC TACTCGCAGC TCCCGAAAAG
GTCTCTGACT TAGGCTTCAG GGGCGCAAAA ACGATGGCGG CAAAAATCAT TGAAAATGCC
GACATGCTTA GACTCTCCTA CGAACTTGCT ACCATTAAAA CCGATGTGGA ACTTGAGCAA
GATTGGCATG AGCTCACTGC CAAACCCGCA GATAGAGACG AACTGATCAA ATGCTACAGC
GAGATGGAGT TTAAGCGCTG GCTTGCCGAG GTCTTAGATA ATAAAGCACC AACGACCGTA
GTCGCGGATG CGGCTAAAGT CAAAACCCAA GAAAGCTCTA TGCCAAATCC TGCACTTGAA
ACTCAATACG ACACGATTTT AACCGAAGCT CAGCTTGATG AATGGATTGC CAAGCTGAAA
CAAGCATCAT TAATAGCCGT GGATACAGAG ACCACGAGTC TCGACTATAT GGTCGCGGAA
CTGGTTGGCA TGTCTTTCGC AGTGGAAGCA GGCAAAGCCG CTTACCTGCC TTTAGCTCAC
GATTATGTTG GCGCGCCTCA ACAGTTAGAT AAGCAATTTG CGCTCGAAAA ACTACGCCCT
ATTTTAGAAG ACGATAAGGT CAAAAAAGTC GGCCAGAACC TGAAATATGA CATCAGCGTT
TTGGCTAATG CGGGCATTAA ATTACAGGGT GTCGTATTTG ATACCATGCT CGAATCCTAT
GTTTTTAACT CCGTGGCTTC ACGCCATGAT ATGGATGGAT TAGCGATCAA GTATCTAGGC
CATAAAAACA TTGGCTTTGA AGATATTGCA GGCAAAGGGG CGAAACAACT TACCTTCAAT
CAAATCCCGT TGGAAGTTGC AGCCCCGTAT GCTGCGGAGG ATGCGGATAT TACTCTGCGT
TTACACCAGC ACCTATGGCC AAGGCTAGAA AAAGAACCCC AATTGGCCTC AGTATTTACT
GAAATTGAAT TACCCTTAAT CCAAGTACTA TCAGACATTG AGCGCCAAGG TGTATTAATT
GATAGCATGT TACTCGGCCA ACAGAGTGAT GAGCTAGCGC GTAAAATCGA TACCTTAGAA
GAAAAAGCCT ACGAGATTGC AGGTGAAAAA TTTAATCTCG GTTCACCCAA ACAACTGCAA
GTGCTATTTT TTGAAAAACT AGGTTATCCA ATCACCAAAA AAACACCAAA GGGCGCGCCA
TCGACCGCGG AAGAAGTATT AGTCGAATTA GCCTTAGATT TCCCACTGCC AAAGGTGATC
CTCGAGCATC GCAGCCTATC TAAGTTAAAA AGTACTTACA CAGATAAACT ACCGCTGATG
GTCAATGCCA AGACTGGGCG CGTTCACACA AGTTACCACC AAGCTAATGC GGCAACAGGG
CGCTTATCGT CAAGCGAGCC TAACCTGCAG AATATTCCTA TTCGTACCGA AGAAGGTCGC
CGCATTCGCC AAGCCTTTAT CGCCCCTGCA GGTCGTAAAA TTTTGGCCGC TGATTATTCA
CAAATCGAAC TGCGGATCAT GGCACATCTA TCCCAAGATG CGGGTCTGCT CAAAGCCTTC
GCCGAGGGTA AAGACATTCA CAGAGCCACC GCTGCCGAAG TATTTGGAAC TGACTTTGAT
GCTGTAACAA CAGAACAGCG ACGCCGCGCT AAAGCCGTAA ACTTCGGCCT TATTTATGGT
ATGTCAGCCT TTGGTTTAGC TCGTCAACTG GATATTCCTC GTAACGAAGC TCAAACCTAT
ATTGATACTT ACTTCGCCCG CTACCCGGGA GTGTTAAGGT ATATGGAAGA AACGCGCGCA
GGAGCAGCAG AATTAGGATA TGTTTCAACA CTATTTGGTC GTCGCCTCTA CTTGCCCGAA
ATCCGGGATC GTAATGCAAT GCGCCGCCAA GGCGCAGAAC GTGCTGCGAT TAACGCACCG
ATGCAAGGCA CGGCTGCCGA TATCATCAAA AAAGCCATGA TCAATATTGC CCAGTGGATC
AAGACAGAAA CCCAAGGCGA AATCGCCATG ATTATGCAAG TCCACGACGA ATTAGTATTC
GAAGTCGATG CCGATAAAGC AGAGACGCTC AAACAAAAAG TATGTGAACT CATGGCGAAG
GCTGCAATCC TCGATGTAGC ATTACTCGCA GAAGCTGGCA TTGGTGATAA TTGGGATGAA
GCCCACTAA
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| Protein sequence | MPTIANNPLV LVDGSSYLYR AYYAPPHLTN SKGEATGAVY GVVNMLRSLL SRYQPSHIAV
VFDAKGKTFR NDMYSEYKAQ RPPMPDDLRS QIEPLHRIIH ALGLPLISIP GVEADDVIGT
IARQASRENR AVLISTGDKD MAQLVDENIT LINTMTDTIM GPDEVAAKYG VGPDRIIDFL
ALMGDKADNI PGLPGVGEKT ALAMLTGAGS VANLLAAPEK VSDLGFRGAK TMAAKIIENA
DMLRLSYELA TIKTDVELEQ DWHELTAKPA DRDELIKCYS EMEFKRWLAE VLDNKAPTTV
VADAAKVKTQ ESSMPNPALE TQYDTILTEA QLDEWIAKLK QASLIAVDTE TTSLDYMVAE
LVGMSFAVEA GKAAYLPLAH DYVGAPQQLD KQFALEKLRP ILEDDKVKKV GQNLKYDISV
LANAGIKLQG VVFDTMLESY VFNSVASRHD MDGLAIKYLG HKNIGFEDIA GKGAKQLTFN
QIPLEVAAPY AAEDADITLR LHQHLWPRLE KEPQLASVFT EIELPLIQVL SDIERQGVLI
DSMLLGQQSD ELARKIDTLE EKAYEIAGEK FNLGSPKQLQ VLFFEKLGYP ITKKTPKGAP
STAEEVLVEL ALDFPLPKVI LEHRSLSKLK STYTDKLPLM VNAKTGRVHT SYHQANAATG
RLSSSEPNLQ NIPIRTEEGR RIRQAFIAPA GRKILAADYS QIELRIMAHL SQDAGLLKAF
AEGKDIHRAT AAEVFGTDFD AVTTEQRRRA KAVNFGLIYG MSAFGLARQL DIPRNEAQTY
IDTYFARYPG VLRYMEETRA GAAELGYVST LFGRRLYLPE IRDRNAMRRQ GAERAAINAP
MQGTAADIIK KAMINIAQWI KTETQGEIAM IMQVHDELVF EVDADKAETL KQKVCELMAK
AAILDVALLA EAGIGDNWDE AH
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