| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3904 |
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| Symbol | |
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| ID | 5081334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 4529300 |
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| End bp | 4530145 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640501116 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001185409 |
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| Protein GI | 146294985 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00422303 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAGAAA TTGGCAGACT CCCCAACAGC AGAGCCGCGC AGGCATTTGT CGATTACCTC
AAAGGTGAAA ATATTGACTG CCAAATCGAG CCGCTGGTTC AAGGTGTCGC CATTCTTGTT
ATCCATGACA AAGATGTGGA ACAAGCACGC CAAGAGTTTG CCCATTTTAT TGCCCACCCT
TACGACAATA AATATCTGCA AGCCTCATGG GAACATGGCG ATACTCAGAC CAAACTCGAT
TATGGCGCCC CTTCGCTACA GCTCTTTACC CAATTTATTA CCGGTGCAGG CCCAGTCACG
CTGATTGTAT TTGCGGTTTG TGTACTCATC TTTGCAGCGA TGAACTTAGG ATTCGCCAAT
CCAATCTACG AAACGCTGTC CTATTTTGGA GCAGTATCTC AATCAGATCT CAGCCAGTTC
TGGCGTGTTT TTACACCCAG CCTGCTACAT TTTTCCTCCA TGCACGTCAT CTTTAACTTG
CTCTGGTGGT GGTATTTAGG TGGCCGAATC GAAACCCGTA TCGGTACTAC ACCGTTGCTC
ATCCTACTTT TTATGGCGGG CACATTACCA AACATCATCC AATACTATGT CAGCGGTCCT
AACTTCGGTG GCCTATCGGG CGTTGTGTAT GCAGTGGTGG GTTACACTTG GATCATGGGA
ATACGTAAAC CTGCCGCAGG CATAGGATTA CCGCCTGCAT ATATGGGATT TATGATGATT
TGGTTGGCAT TAGGGTTCAC GGATATTCTA GGGGTTTCGG TTGCTAATGG TGCCCACATT
GGTGGCTTAT TTATAGGTTT AACCCAAGGG TTATTCGATA GCCGAAAGTC CTCGAACTCA
ATCTAA
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| Protein sequence | MIEIGRLPNS RAAQAFVDYL KGENIDCQIE PLVQGVAILV IHDKDVEQAR QEFAHFIAHP
YDNKYLQASW EHGDTQTKLD YGAPSLQLFT QFITGAGPVT LIVFAVCVLI FAAMNLGFAN
PIYETLSYFG AVSQSDLSQF WRVFTPSLLH FSSMHVIFNL LWWWYLGGRI ETRIGTTPLL
ILLFMAGTLP NIIQYYVSGP NFGGLSGVVY AVVGYTWIMG IRKPAAGIGL PPAYMGFMMI
WLALGFTDIL GVSVANGAHI GGLFIGLTQG LFDSRKSSNS I
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