Gene Sputcn32_3890 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_3890 
Symbol 
ID5081272 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand- 
Start bp4515722 
End bp4516267 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content43% 
IMG OID640501102 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_001185395 
Protein GI146294971 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACATTA TTGATACTAA AATAGCCGAT GTAAAAATCA TTGAACCTAA GGTTTTTGGT 
GATGAACGCG GTTTCTTCTT TGAAAGTTTT AACCAACAGC AATTCGAGGC CGCCATTGGT 
CGTCAAGTTC AGTTTGTACA AGACAATCAT TCAAAGTCGA GTAAAGGTGT GTTGCGTGGC 
CTGCATTATC AAGGTTCACC CCATGCACAA GCTAAGTTAG TACGTTGTGT TGTGGGTGAG 
GTGTTTGATG TTGTTGTGGA TATTAGAAAG AACTCTTCCA CGTTTGGTGA ATGGTTGGGT 
GTGAGTTTAA CGGCGGAAAA CAAACGCCAG CTTTGGATCC CTCAGGGCTT TGCCCATGGT 
TTTCTGACTT TGAGTGATAC TGCCGAGTGC TTATATAAAA CCACAGATTA CTATCATCAA 
GCGAGTGAGG GGGCCATCCG TTGGGATGAC CCGCAATTGA ATATTCAATG GCCTATAAAA 
AGTCCGTTAT TATCCCTAAA AGACCAGCAA GCCCAAACCT TTCTCGATTT TAAGCGTTTG 
CTCTAG
 
Protein sequence
MNIIDTKIAD VKIIEPKVFG DERGFFFESF NQQQFEAAIG RQVQFVQDNH SKSSKGVLRG 
LHYQGSPHAQ AKLVRCVVGE VFDVVVDIRK NSSTFGEWLG VSLTAENKRQ LWIPQGFAHG 
FLTLSDTAEC LYKTTDYYHQ ASEGAIRWDD PQLNIQWPIK SPLLSLKDQQ AQTFLDFKRL 
L