Gene Sputcn32_3877 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_3877 
Symbol 
ID5081259 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp4500476 
End bp4502599 
Gene Length2124 bp 
Protein Length707 aa 
Translation table11 
GC content44% 
IMG OID640501089 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001185382 
Protein GI146294958 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000535893 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCTTTCT TTACTCACTT TTTTGGTGTC AGTTGGCAGC AAATGCAGGC CAAGGTGCGT 
TATCGCATAT TAATCCTTAC CTTATTGCCT ATTTTACTGA CGCTGGTGAG TTTAGTTTTT
ATCACCATTT ACTGGAACAT TAGTTACACA GGTAAGCAGC TATTTATGAA GGTAAAAGCT
GACTTAGCAG TGGCTGAAAA TACCCTACAA CAAGTGCAAG TTCGTCAGGA AAAACAGCTC
GAAAAGGTGA TGACATCTTG GACTTTTCAA AATGATTTTC GCCCTATATT GAACGGAGAA
ATGAATCATA GGGCCAATAT TGATGCTTTT CTGAATGAAC AAAAACAACT GCTTAATCTC
GATTATCTAC GTTTAGTCAG TGTCTCAGAG GCGGCGACAG ATCCCGATTT ACGCTTGATT
TTACCCAAAA TGGGCGGTCT ATTGCCTTAT TCTGGCCTGA TGGTGTTATC GCCGGAGCGT
TTAGCACGAA TTGATCCTGA GCTAGCCGTT ACCGCGAGTA TTCCCATTGT TGCAACCTTA
CGGGCCCAAA ATCCGGATAA AGGGGTGGAA GGGCGTGGTT TACTCAGTCG TAGTTTACTG
CCAGTACCTG ATTTAGCGGG TAAGGTTGCT TGGTATTTGG ATGGTGGCAT CTTATTTAAC
CGCGATACAC GCATCGTTGA TCATATTCGG GATTTGGTAT ACGACAAAGG CACGCTCCCT
GAGCGTTCAA TTGGTACGGT TACCATTTTT TTAGATAACA TTCGTATTTC TACTAATGTG
CCGTTGCACT TTTTTCCTCA AGGCAATGAA ACTCAAGGTC GAGCTTTAGG TAGTTTAGTG
TCAGAGGAGG TACGTGAAAA AGTGCTCAAT CGTGGTGAGC TATGGGTGGA TCGTGCCTTT
GTGTTCAATG ATTGGTTTAT TTCTGCCTAT GCACCTTTGG AGGATATTCG AGGCCAGCGA
GTGGGCATGA TCTACACAGG GTTCTCTGAG TCACCCTTTA TTCATAATTA TCTTTTAAAT
ATCATTGAGC TAGGCACAAT TCTGATGTTG GTGCTACTCG TATCAGGTTT ACTGGTTTAT
CGCGGGGCCT ATAGCCTGTT GCTACCGATA GAACGGATCC ATCATGTCGT GCAGGCGGTG
CAGTCTGGGC GCAATATTCG TATCGGCGCC TTAGGTTTGG ACAGAGAAAA CGAATTATCG
AATTTGGCCG AGCAGTTTGA TCGTATGCTC GACTTATTGC AACGTCGTAA TGCACAGATC
CAATCTGCTG CTGAGCAGCT TGAGATGAAG GTCGAAGAAC GGACCCGTAG TCTTCAGGAC
AAAACCTTAG AGTTAGAACG TAACGTCGCA CTGCTAAATG AAACCCGCCA GCAGCTTGTG
ACTAACGAAA AACTCACTGC ACTCGGTGAG TTAACCGCAG GCATAGCCCA TGAAATTAAT
AATCCCACCG CGGTTATTCT CGGTAATATG GAGCTAATGC GCTACGAGCT TGGGGATAAT
GCGGACCTCG TTAAAGAAGA AATTGATTTA GTCATCCAGC AAGTGATGCG TATCAGCACC
ATTATTCGCA GTTTATTACA GTACAGCCGT CCCGGTGAAT TTAATGCGCC ACTAGAAATG
CAGTCTATTA CTCCCATTAT TGAAGAGACT ATGGTGCTGG TTCGTCATTC GATTAAAAAA
CAAGAAGTTA TCTTGATCAC TGAGTTGAGT GCGACTTGCC TTGTGCAAGT CAATCGACCG
CAGCTATTGC AGGTCTTGAT TAATTTGGTG ATAAACGCAG CGCATGCAAT GGACGGTAAA
GGTCGTATTT GGGTAAGGAC TTACGACTGG TTGCAACAAG ATATGCCCAT AGGCGTTAAA
ATTGAGGTTG AAGATGAAGG CTCTGGAATT GCGCCTGAGT TATTGGGTCG AATTTTTGAC
CCATTTTATA CCACCCGTAA GGATGGTACT GGGTTAGGGC TTTCTTTAAG TTATGGAATT
ATAAAACGAA TTGGTGGGAC GATAGAGGTC AGTTCAACCT TAGGTAAAGG TACTGTATTC
ACAATTGGTT TATACCATGA GGCGAAAGAA GAGCAGGAGA ATAATCCCTA TGACGGATTA
CATTTCTCTG GAGCTGAAAT TTAA
 
Protein sequence
MSFFTHFFGV SWQQMQAKVR YRILILTLLP ILLTLVSLVF ITIYWNISYT GKQLFMKVKA 
DLAVAENTLQ QVQVRQEKQL EKVMTSWTFQ NDFRPILNGE MNHRANIDAF LNEQKQLLNL
DYLRLVSVSE AATDPDLRLI LPKMGGLLPY SGLMVLSPER LARIDPELAV TASIPIVATL
RAQNPDKGVE GRGLLSRSLL PVPDLAGKVA WYLDGGILFN RDTRIVDHIR DLVYDKGTLP
ERSIGTVTIF LDNIRISTNV PLHFFPQGNE TQGRALGSLV SEEVREKVLN RGELWVDRAF
VFNDWFISAY APLEDIRGQR VGMIYTGFSE SPFIHNYLLN IIELGTILML VLLVSGLLVY
RGAYSLLLPI ERIHHVVQAV QSGRNIRIGA LGLDRENELS NLAEQFDRML DLLQRRNAQI
QSAAEQLEMK VEERTRSLQD KTLELERNVA LLNETRQQLV TNEKLTALGE LTAGIAHEIN
NPTAVILGNM ELMRYELGDN ADLVKEEIDL VIQQVMRIST IIRSLLQYSR PGEFNAPLEM
QSITPIIEET MVLVRHSIKK QEVILITELS ATCLVQVNRP QLLQVLINLV INAAHAMDGK
GRIWVRTYDW LQQDMPIGVK IEVEDEGSGI APELLGRIFD PFYTTRKDGT GLGLSLSYGI
IKRIGGTIEV SSTLGKGTVF TIGLYHEAKE EQENNPYDGL HFSGAEI