| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3877 |
|---|
| Symbol | |
|---|
| ID | 5081259 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 4500476 |
|---|
| End bp | 4502599 |
|---|
| Gene Length | 2124 bp |
|---|
| Protein Length | 707 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640501089 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001185382 |
|---|
| Protein GI | 146294958 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000535893 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCTTTCT TTACTCACTT TTTTGGTGTC AGTTGGCAGC AAATGCAGGC CAAGGTGCGT
TATCGCATAT TAATCCTTAC CTTATTGCCT ATTTTACTGA CGCTGGTGAG TTTAGTTTTT
ATCACCATTT ACTGGAACAT TAGTTACACA GGTAAGCAGC TATTTATGAA GGTAAAAGCT
GACTTAGCAG TGGCTGAAAA TACCCTACAA CAAGTGCAAG TTCGTCAGGA AAAACAGCTC
GAAAAGGTGA TGACATCTTG GACTTTTCAA AATGATTTTC GCCCTATATT GAACGGAGAA
ATGAATCATA GGGCCAATAT TGATGCTTTT CTGAATGAAC AAAAACAACT GCTTAATCTC
GATTATCTAC GTTTAGTCAG TGTCTCAGAG GCGGCGACAG ATCCCGATTT ACGCTTGATT
TTACCCAAAA TGGGCGGTCT ATTGCCTTAT TCTGGCCTGA TGGTGTTATC GCCGGAGCGT
TTAGCACGAA TTGATCCTGA GCTAGCCGTT ACCGCGAGTA TTCCCATTGT TGCAACCTTA
CGGGCCCAAA ATCCGGATAA AGGGGTGGAA GGGCGTGGTT TACTCAGTCG TAGTTTACTG
CCAGTACCTG ATTTAGCGGG TAAGGTTGCT TGGTATTTGG ATGGTGGCAT CTTATTTAAC
CGCGATACAC GCATCGTTGA TCATATTCGG GATTTGGTAT ACGACAAAGG CACGCTCCCT
GAGCGTTCAA TTGGTACGGT TACCATTTTT TTAGATAACA TTCGTATTTC TACTAATGTG
CCGTTGCACT TTTTTCCTCA AGGCAATGAA ACTCAAGGTC GAGCTTTAGG TAGTTTAGTG
TCAGAGGAGG TACGTGAAAA AGTGCTCAAT CGTGGTGAGC TATGGGTGGA TCGTGCCTTT
GTGTTCAATG ATTGGTTTAT TTCTGCCTAT GCACCTTTGG AGGATATTCG AGGCCAGCGA
GTGGGCATGA TCTACACAGG GTTCTCTGAG TCACCCTTTA TTCATAATTA TCTTTTAAAT
ATCATTGAGC TAGGCACAAT TCTGATGTTG GTGCTACTCG TATCAGGTTT ACTGGTTTAT
CGCGGGGCCT ATAGCCTGTT GCTACCGATA GAACGGATCC ATCATGTCGT GCAGGCGGTG
CAGTCTGGGC GCAATATTCG TATCGGCGCC TTAGGTTTGG ACAGAGAAAA CGAATTATCG
AATTTGGCCG AGCAGTTTGA TCGTATGCTC GACTTATTGC AACGTCGTAA TGCACAGATC
CAATCTGCTG CTGAGCAGCT TGAGATGAAG GTCGAAGAAC GGACCCGTAG TCTTCAGGAC
AAAACCTTAG AGTTAGAACG TAACGTCGCA CTGCTAAATG AAACCCGCCA GCAGCTTGTG
ACTAACGAAA AACTCACTGC ACTCGGTGAG TTAACCGCAG GCATAGCCCA TGAAATTAAT
AATCCCACCG CGGTTATTCT CGGTAATATG GAGCTAATGC GCTACGAGCT TGGGGATAAT
GCGGACCTCG TTAAAGAAGA AATTGATTTA GTCATCCAGC AAGTGATGCG TATCAGCACC
ATTATTCGCA GTTTATTACA GTACAGCCGT CCCGGTGAAT TTAATGCGCC ACTAGAAATG
CAGTCTATTA CTCCCATTAT TGAAGAGACT ATGGTGCTGG TTCGTCATTC GATTAAAAAA
CAAGAAGTTA TCTTGATCAC TGAGTTGAGT GCGACTTGCC TTGTGCAAGT CAATCGACCG
CAGCTATTGC AGGTCTTGAT TAATTTGGTG ATAAACGCAG CGCATGCAAT GGACGGTAAA
GGTCGTATTT GGGTAAGGAC TTACGACTGG TTGCAACAAG ATATGCCCAT AGGCGTTAAA
ATTGAGGTTG AAGATGAAGG CTCTGGAATT GCGCCTGAGT TATTGGGTCG AATTTTTGAC
CCATTTTATA CCACCCGTAA GGATGGTACT GGGTTAGGGC TTTCTTTAAG TTATGGAATT
ATAAAACGAA TTGGTGGGAC GATAGAGGTC AGTTCAACCT TAGGTAAAGG TACTGTATTC
ACAATTGGTT TATACCATGA GGCGAAAGAA GAGCAGGAGA ATAATCCCTA TGACGGATTA
CATTTCTCTG GAGCTGAAAT TTAA
|
|---|
| Protein sequence | MSFFTHFFGV SWQQMQAKVR YRILILTLLP ILLTLVSLVF ITIYWNISYT GKQLFMKVKA
DLAVAENTLQ QVQVRQEKQL EKVMTSWTFQ NDFRPILNGE MNHRANIDAF LNEQKQLLNL
DYLRLVSVSE AATDPDLRLI LPKMGGLLPY SGLMVLSPER LARIDPELAV TASIPIVATL
RAQNPDKGVE GRGLLSRSLL PVPDLAGKVA WYLDGGILFN RDTRIVDHIR DLVYDKGTLP
ERSIGTVTIF LDNIRISTNV PLHFFPQGNE TQGRALGSLV SEEVREKVLN RGELWVDRAF
VFNDWFISAY APLEDIRGQR VGMIYTGFSE SPFIHNYLLN IIELGTILML VLLVSGLLVY
RGAYSLLLPI ERIHHVVQAV QSGRNIRIGA LGLDRENELS NLAEQFDRML DLLQRRNAQI
QSAAEQLEMK VEERTRSLQD KTLELERNVA LLNETRQQLV TNEKLTALGE LTAGIAHEIN
NPTAVILGNM ELMRYELGDN ADLVKEEIDL VIQQVMRIST IIRSLLQYSR PGEFNAPLEM
QSITPIIEET MVLVRHSIKK QEVILITELS ATCLVQVNRP QLLQVLINLV INAAHAMDGK
GRIWVRTYDW LQQDMPIGVK IEVEDEGSGI APELLGRIFD PFYTTRKDGT GLGLSLSYGI
IKRIGGTIEV SSTLGKGTVF TIGLYHEAKE EQENNPYDGL HFSGAEI
|
|---|
| |