Gene Sputcn32_3856 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_3856 
Symbol 
ID5081238 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp4473695 
End bp4477345 
Gene Length3651 bp 
Protein Length1216 aa 
Translation table11 
GC content44% 
IMG OID640501068 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) 
Protein accessionYP_001185361 
Protein GI146294937 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATATCA GCATAAAGGG ATTGAATATC AAATCGTTTA CTCACTCTCT TAGGGTTAAT 
TTTCTCATAA CCTTAGCCTA TGTCGTTGTA GGGAAAATAG GTTTAATGAT TGCCTTACCG
CCTGGATATT CGGCGGCAAT TTGGCCTGCG GCAGGGATAG CCATTGCCGC TTGTATTTTA
TGGAAAGAGT ACACTCCTTG GATTGGGGTT TTTATTGGAT CTTTTCTCAT TAATGCCAAT
ATGGGAGGAT TTGTTCACTG GAGTTGGCTA CCCGTTGTTA TCGCTATGGG TTCCAGCATT
CAAGCAATAT TAGCCGCCAA AATGATGAGT CGAATCGATC ATCTTGTCAC CTTAGATAGT
CCTCATACTG TTATCAAATC CTGTCTGGGT CTCGCTTTAA CCTGCATAGT CGCAACGGTT
TGTGGCAACC TTGCTTTAGT TATCAGTGGC ACTATCCCAC AGTCTGACTT TCTCGAAAGC
CTTGTTAATT GGTGGATGGG AGACTTACTC GGTGCGATCA TTTTTATCCC ATTGACTATG
TTAGTGTTCG ACAAACGGGA TATTTGGCGA TCCCGTCGTA TCCAAACGGG GATACCGATG
TTTGTGGGAT TTTTATGTTG CGTAGGGATT TATAGCTATT CCGATATGAA TCAAAGGCAG
CAATTACAGG ATAAATTTGA GATCCAATCG AATGCGATCA TCAGCCGTAT TGAAGGTTTT
CAAGATGCCA ATTTGCAGCG AATTATTGCA TTAGCCAGTT TGTTTGATAA TAGCGAGCAG
GTTTCTGTCG ACGAGTTTAT ACAGTTTGGT AAGCGTACGT TGTTACCAAC GGATGGTGTC
CATGCGTGGG TATGGGCACC TCTTGTTGCC GCAACAGAAC AGGAAAGCTT TGAGATTGCG
GCAAGTGCGG CGATCTCTGG TGCTTATAAT GTGAAGCGTC CACAAAATTG GCAAGTTAAT
ACCGATGGTT GGTTAGTGCC TGTTATGTAT ATACAGCCAC TCGCCAACCA TGAAGCCGTG
TTGGGAATGG ATCTAAATAG CGAGCCTATT CGGGCTGCTG CGATTGCAAA AGTCAGAACC
ACCCAAGCCC CTGTAATGAC GGCTAAAGTC CAATTAGCGC CGGATTTCAC AGGTCCTAGC
GGTACTTTGT TATTTGCACC AGTGTTTGAT CGCTTAGGAG AAATAGCGGG TTTTTGTACA
GCCGTTATCG ACTTACAACA GATCATCAAT GAAGTTGAGC AAGTACAGGG ATTGCAGTGG
AAGCTTATTG ATATGAGTGC GGGCGGGTCT TTGCTCTACT CAAATACCGA CAAAGATTTC
CCAATATTTT CGGACTATAT ATTTAGCGAT AAGAATGGGC ATTTTTTTCA AGCTAATCTA
ATGTTTGCCG ATCGCCATTG GCACATAGTG CTTTACCAGT CCTATACGAT GCTAATGGGC
GATACCTTTA GTTTGTCGTT GCTGATGTTG CTCCTTGCCT TTACAACCTG TGCAGTTATC
GGAGGTTTGA CCTTAGTGTA TTCCGGTGAG CACCATCGGA TTGCAGAAAA AGTGCAAGAA
AAAACCATGG CACTGTCTAA AGAGATAGCA CGTAGTCAGG CTTTCCAAGC CACCTTAGTT
GAAAGTGAGC AGCGATATCG AAACTTGTTT GATAAAGCCC CTGTGGGGCA TGTGCTGAAA
CAAGTGGACA ATGGTCGATT TGTCGCCATT AACCAAGCCT TTACCGATAT TACGGGTTAC
TCACTCGATG AACTTAATCA ACTCGATCCT TGGGAGTTAA CCTCCAAGCG CTATCAATTA
AGTGAAGCTG AGCAATTAGA ACGCTTAAAG CAAACTCGCC GTTATGGCCC TTATCAGAAA
CATTATCTAC ACAAGAATGG GCAATCAGTG GCAGTTCGCC TCAATGGTGC TTTGGTTACA
GGTGCCAATG GTGAACAACT TGTGCTTTTT ATTGTGGAGG ATATTACTGA GCAGGAACGT
ACTGTTGCTA GAGTGAATCT GCTCGCGCAG GTATTCCAGC AGAGCGGTGA GGGCATCACG
ATTATAGATG CCAATGACAT TATTGTGGAT GTGAACACCG CGTTTTCCCA GATCACGGGT
TATTCACGAG AGGACATTAT TGGTAAAAAC TGCCGCTTTT TAGAGGCTAA ACGTACGGAT
AAAAGTATCG ATCCTCAAGT CCGTGCAGCC CTCGAACAAA CGGGATTCTG GCAGGGTGAG
GTATGGGATA GACATAAAGA CGGTTACGAT TTCCCCAAAT GGTTGATGAT GTCCGTCGTG
CGTGATGAAT CAGGCGCAGT TAGTCATTAC ATTGGGAGTT TTACCGATAT TAGTGAACGG
AAAATGAGTG AGGAACGGAT CCATTTTCTC GCTCACCATG ATTCCCTAAC ATTGTTGCCT
AACCGCCTGA GTTTACAGTC GAGTCTTGAA ATTGTCTTCG GCGAAGCATT GGCCTCACAA
AGCCAAATAG CGGTCATGTT TATCGATATG GATCATTTTA AAAATATTAA TGACACCCTA
GGACATCATG TGGGTGACCA ATTATTGCTT GAAGTGGCGC GGAGATTAAA AAATATTGTT
GATAATAATG AGATTGTTGC GCGCTTAGGT GGGGATGAAT TTGTAGTGGT ATTGTCCGAT
ACCAACCACG ATGAAGTGGC GAGTTTAGCT GAAGCACTGC GTAGTGGCCT TAGCCAAACC
TATATCATTG ACAATAATTC TTTGCACTCT TCTCCCAGTA TTGGCATTAG CCTATTTCCG
ACTGATGGCA ATACTGTCGA AGCGTTAATG AAAAATGCGG ATATGGCGAT GTACCGCGCA
AAAGCGGCTG GACGCAATAA CTATCAATTC TTTACAGCGG CAATGAATAC CTTGATTACC
GAACGTCAAC ATATTGAAAC GGGATTAAGG CAAGTACTGG CAAATGAAGA ACTGCAATTA
CATTACCAGC CACAAATCGA TATTCGTACA GGGCAAGTGG TGAGTGTTGA AGCCCTAGTG
CGTTGGCAGC ATCCCGAGTT TGGTCTTATC TCACCAGACC GCTTTATTTC GATAGCAGAA
GAAATTGACA TGATTATTCC TATCGGCCAA TGGGTACTTG AAACGGCGAT GGCACAACTA
GCCGCTTGGC GTGCCGCGGG AGCGACAAGG CTTAGAATGG CGGTAAATTT ATCGGCACAC
CAATTGCGGA AAGACACGAT TGTTGCCGAT ATCACCAATG TTTTGCTTAA GCATCAACTT
GGTAAGGGGG CGTTAGAGTT AGAAATCACC GAGAGTGTTG CCATGCAATA CCCTGAGCAA
AATGCACGTT TATTGGCGGA ACTACGCCAA CATGGTATTG AGCTGGCTAT CGATGACTTT
GGTACAGGTT ATTCCTCTTT ATCCTATTTA AAACTTTTAC CCCTAGACAG GCTCAAACTT
GACCGTTCCT TTGTAAAGGA TATTGAGACC GACCCTAACG ATGCAGCCAT TAGTGCTGCG
ACTATTTCTA TGTCACATGA ATTAGGACTA ACGGTTGTTG CTGAGGGCGT CGAAAATGAA
GCGCAACTCG TTCTATTATC GAGTATGGGG TGTGATTTAG TGCAGGGATA TTATTTCAGT
AAACCCTTGC CAGCCGAAGA ATGTTTCCGT TTTATTCAGC GTAACTTATA G
 
Protein sequence
MHISIKGLNI KSFTHSLRVN FLITLAYVVV GKIGLMIALP PGYSAAIWPA AGIAIAACIL 
WKEYTPWIGV FIGSFLINAN MGGFVHWSWL PVVIAMGSSI QAILAAKMMS RIDHLVTLDS
PHTVIKSCLG LALTCIVATV CGNLALVISG TIPQSDFLES LVNWWMGDLL GAIIFIPLTM
LVFDKRDIWR SRRIQTGIPM FVGFLCCVGI YSYSDMNQRQ QLQDKFEIQS NAIISRIEGF
QDANLQRIIA LASLFDNSEQ VSVDEFIQFG KRTLLPTDGV HAWVWAPLVA ATEQESFEIA
ASAAISGAYN VKRPQNWQVN TDGWLVPVMY IQPLANHEAV LGMDLNSEPI RAAAIAKVRT
TQAPVMTAKV QLAPDFTGPS GTLLFAPVFD RLGEIAGFCT AVIDLQQIIN EVEQVQGLQW
KLIDMSAGGS LLYSNTDKDF PIFSDYIFSD KNGHFFQANL MFADRHWHIV LYQSYTMLMG
DTFSLSLLML LLAFTTCAVI GGLTLVYSGE HHRIAEKVQE KTMALSKEIA RSQAFQATLV
ESEQRYRNLF DKAPVGHVLK QVDNGRFVAI NQAFTDITGY SLDELNQLDP WELTSKRYQL
SEAEQLERLK QTRRYGPYQK HYLHKNGQSV AVRLNGALVT GANGEQLVLF IVEDITEQER
TVARVNLLAQ VFQQSGEGIT IIDANDIIVD VNTAFSQITG YSREDIIGKN CRFLEAKRTD
KSIDPQVRAA LEQTGFWQGE VWDRHKDGYD FPKWLMMSVV RDESGAVSHY IGSFTDISER
KMSEERIHFL AHHDSLTLLP NRLSLQSSLE IVFGEALASQ SQIAVMFIDM DHFKNINDTL
GHHVGDQLLL EVARRLKNIV DNNEIVARLG GDEFVVVLSD TNHDEVASLA EALRSGLSQT
YIIDNNSLHS SPSIGISLFP TDGNTVEALM KNADMAMYRA KAAGRNNYQF FTAAMNTLIT
ERQHIETGLR QVLANEELQL HYQPQIDIRT GQVVSVEALV RWQHPEFGLI SPDRFISIAE
EIDMIIPIGQ WVLETAMAQL AAWRAAGATR LRMAVNLSAH QLRKDTIVAD ITNVLLKHQL
GKGALELEIT ESVAMQYPEQ NARLLAELRQ HGIELAIDDF GTGYSSLSYL KLLPLDRLKL
DRSFVKDIET DPNDAAISAA TISMSHELGL TVVAEGVENE AQLVLLSSMG CDLVQGYYFS
KPLPAEECFR FIQRNL