Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_3856 |
Symbol | |
ID | 5081238 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 4473695 |
End bp | 4477345 |
Gene Length | 3651 bp |
Protein Length | 1216 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640501068 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
Protein accession | YP_001185361 |
Protein GI | 146294937 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATATCA GCATAAAGGG ATTGAATATC AAATCGTTTA CTCACTCTCT TAGGGTTAAT TTTCTCATAA CCTTAGCCTA TGTCGTTGTA GGGAAAATAG GTTTAATGAT TGCCTTACCG CCTGGATATT CGGCGGCAAT TTGGCCTGCG GCAGGGATAG CCATTGCCGC TTGTATTTTA TGGAAAGAGT ACACTCCTTG GATTGGGGTT TTTATTGGAT CTTTTCTCAT TAATGCCAAT ATGGGAGGAT TTGTTCACTG GAGTTGGCTA CCCGTTGTTA TCGCTATGGG TTCCAGCATT CAAGCAATAT TAGCCGCCAA AATGATGAGT CGAATCGATC ATCTTGTCAC CTTAGATAGT CCTCATACTG TTATCAAATC CTGTCTGGGT CTCGCTTTAA CCTGCATAGT CGCAACGGTT TGTGGCAACC TTGCTTTAGT TATCAGTGGC ACTATCCCAC AGTCTGACTT TCTCGAAAGC CTTGTTAATT GGTGGATGGG AGACTTACTC GGTGCGATCA TTTTTATCCC ATTGACTATG TTAGTGTTCG ACAAACGGGA TATTTGGCGA TCCCGTCGTA TCCAAACGGG GATACCGATG TTTGTGGGAT TTTTATGTTG CGTAGGGATT TATAGCTATT CCGATATGAA TCAAAGGCAG CAATTACAGG ATAAATTTGA GATCCAATCG AATGCGATCA TCAGCCGTAT TGAAGGTTTT CAAGATGCCA ATTTGCAGCG AATTATTGCA TTAGCCAGTT TGTTTGATAA TAGCGAGCAG GTTTCTGTCG ACGAGTTTAT ACAGTTTGGT AAGCGTACGT TGTTACCAAC GGATGGTGTC CATGCGTGGG TATGGGCACC TCTTGTTGCC GCAACAGAAC AGGAAAGCTT TGAGATTGCG GCAAGTGCGG CGATCTCTGG TGCTTATAAT GTGAAGCGTC CACAAAATTG GCAAGTTAAT ACCGATGGTT GGTTAGTGCC TGTTATGTAT ATACAGCCAC TCGCCAACCA TGAAGCCGTG TTGGGAATGG ATCTAAATAG CGAGCCTATT CGGGCTGCTG CGATTGCAAA AGTCAGAACC ACCCAAGCCC CTGTAATGAC GGCTAAAGTC CAATTAGCGC CGGATTTCAC AGGTCCTAGC GGTACTTTGT TATTTGCACC AGTGTTTGAT CGCTTAGGAG AAATAGCGGG TTTTTGTACA GCCGTTATCG ACTTACAACA GATCATCAAT GAAGTTGAGC AAGTACAGGG ATTGCAGTGG AAGCTTATTG ATATGAGTGC GGGCGGGTCT TTGCTCTACT CAAATACCGA CAAAGATTTC CCAATATTTT CGGACTATAT ATTTAGCGAT AAGAATGGGC ATTTTTTTCA AGCTAATCTA ATGTTTGCCG ATCGCCATTG GCACATAGTG CTTTACCAGT CCTATACGAT GCTAATGGGC GATACCTTTA GTTTGTCGTT GCTGATGTTG CTCCTTGCCT TTACAACCTG TGCAGTTATC GGAGGTTTGA CCTTAGTGTA TTCCGGTGAG CACCATCGGA TTGCAGAAAA AGTGCAAGAA AAAACCATGG CACTGTCTAA AGAGATAGCA CGTAGTCAGG CTTTCCAAGC CACCTTAGTT GAAAGTGAGC AGCGATATCG AAACTTGTTT GATAAAGCCC CTGTGGGGCA TGTGCTGAAA CAAGTGGACA ATGGTCGATT TGTCGCCATT AACCAAGCCT TTACCGATAT TACGGGTTAC TCACTCGATG AACTTAATCA ACTCGATCCT TGGGAGTTAA CCTCCAAGCG CTATCAATTA AGTGAAGCTG AGCAATTAGA ACGCTTAAAG CAAACTCGCC GTTATGGCCC TTATCAGAAA CATTATCTAC ACAAGAATGG GCAATCAGTG GCAGTTCGCC TCAATGGTGC TTTGGTTACA GGTGCCAATG GTGAACAACT TGTGCTTTTT ATTGTGGAGG ATATTACTGA GCAGGAACGT ACTGTTGCTA GAGTGAATCT GCTCGCGCAG GTATTCCAGC AGAGCGGTGA GGGCATCACG ATTATAGATG CCAATGACAT TATTGTGGAT GTGAACACCG CGTTTTCCCA GATCACGGGT TATTCACGAG AGGACATTAT TGGTAAAAAC TGCCGCTTTT TAGAGGCTAA ACGTACGGAT AAAAGTATCG ATCCTCAAGT CCGTGCAGCC CTCGAACAAA CGGGATTCTG GCAGGGTGAG GTATGGGATA GACATAAAGA CGGTTACGAT TTCCCCAAAT GGTTGATGAT GTCCGTCGTG CGTGATGAAT CAGGCGCAGT TAGTCATTAC ATTGGGAGTT TTACCGATAT TAGTGAACGG AAAATGAGTG AGGAACGGAT CCATTTTCTC GCTCACCATG ATTCCCTAAC ATTGTTGCCT AACCGCCTGA GTTTACAGTC GAGTCTTGAA ATTGTCTTCG GCGAAGCATT GGCCTCACAA AGCCAAATAG CGGTCATGTT TATCGATATG GATCATTTTA AAAATATTAA TGACACCCTA GGACATCATG TGGGTGACCA ATTATTGCTT GAAGTGGCGC GGAGATTAAA AAATATTGTT GATAATAATG AGATTGTTGC GCGCTTAGGT GGGGATGAAT TTGTAGTGGT ATTGTCCGAT ACCAACCACG ATGAAGTGGC GAGTTTAGCT GAAGCACTGC GTAGTGGCCT TAGCCAAACC TATATCATTG ACAATAATTC TTTGCACTCT TCTCCCAGTA TTGGCATTAG CCTATTTCCG ACTGATGGCA ATACTGTCGA AGCGTTAATG AAAAATGCGG ATATGGCGAT GTACCGCGCA AAAGCGGCTG GACGCAATAA CTATCAATTC TTTACAGCGG CAATGAATAC CTTGATTACC GAACGTCAAC ATATTGAAAC GGGATTAAGG CAAGTACTGG CAAATGAAGA ACTGCAATTA CATTACCAGC CACAAATCGA TATTCGTACA GGGCAAGTGG TGAGTGTTGA AGCCCTAGTG CGTTGGCAGC ATCCCGAGTT TGGTCTTATC TCACCAGACC GCTTTATTTC GATAGCAGAA GAAATTGACA TGATTATTCC TATCGGCCAA TGGGTACTTG AAACGGCGAT GGCACAACTA GCCGCTTGGC GTGCCGCGGG AGCGACAAGG CTTAGAATGG CGGTAAATTT ATCGGCACAC CAATTGCGGA AAGACACGAT TGTTGCCGAT ATCACCAATG TTTTGCTTAA GCATCAACTT GGTAAGGGGG CGTTAGAGTT AGAAATCACC GAGAGTGTTG CCATGCAATA CCCTGAGCAA AATGCACGTT TATTGGCGGA ACTACGCCAA CATGGTATTG AGCTGGCTAT CGATGACTTT GGTACAGGTT ATTCCTCTTT ATCCTATTTA AAACTTTTAC CCCTAGACAG GCTCAAACTT GACCGTTCCT TTGTAAAGGA TATTGAGACC GACCCTAACG ATGCAGCCAT TAGTGCTGCG ACTATTTCTA TGTCACATGA ATTAGGACTA ACGGTTGTTG CTGAGGGCGT CGAAAATGAA GCGCAACTCG TTCTATTATC GAGTATGGGG TGTGATTTAG TGCAGGGATA TTATTTCAGT AAACCCTTGC CAGCCGAAGA ATGTTTCCGT TTTATTCAGC GTAACTTATA G
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Protein sequence | MHISIKGLNI KSFTHSLRVN FLITLAYVVV GKIGLMIALP PGYSAAIWPA AGIAIAACIL WKEYTPWIGV FIGSFLINAN MGGFVHWSWL PVVIAMGSSI QAILAAKMMS RIDHLVTLDS PHTVIKSCLG LALTCIVATV CGNLALVISG TIPQSDFLES LVNWWMGDLL GAIIFIPLTM LVFDKRDIWR SRRIQTGIPM FVGFLCCVGI YSYSDMNQRQ QLQDKFEIQS NAIISRIEGF QDANLQRIIA LASLFDNSEQ VSVDEFIQFG KRTLLPTDGV HAWVWAPLVA ATEQESFEIA ASAAISGAYN VKRPQNWQVN TDGWLVPVMY IQPLANHEAV LGMDLNSEPI RAAAIAKVRT TQAPVMTAKV QLAPDFTGPS GTLLFAPVFD RLGEIAGFCT AVIDLQQIIN EVEQVQGLQW KLIDMSAGGS LLYSNTDKDF PIFSDYIFSD KNGHFFQANL MFADRHWHIV LYQSYTMLMG DTFSLSLLML LLAFTTCAVI GGLTLVYSGE HHRIAEKVQE KTMALSKEIA RSQAFQATLV ESEQRYRNLF DKAPVGHVLK QVDNGRFVAI NQAFTDITGY SLDELNQLDP WELTSKRYQL SEAEQLERLK QTRRYGPYQK HYLHKNGQSV AVRLNGALVT GANGEQLVLF IVEDITEQER TVARVNLLAQ VFQQSGEGIT IIDANDIIVD VNTAFSQITG YSREDIIGKN CRFLEAKRTD KSIDPQVRAA LEQTGFWQGE VWDRHKDGYD FPKWLMMSVV RDESGAVSHY IGSFTDISER KMSEERIHFL AHHDSLTLLP NRLSLQSSLE IVFGEALASQ SQIAVMFIDM DHFKNINDTL GHHVGDQLLL EVARRLKNIV DNNEIVARLG GDEFVVVLSD TNHDEVASLA EALRSGLSQT YIIDNNSLHS SPSIGISLFP TDGNTVEALM KNADMAMYRA KAAGRNNYQF FTAAMNTLIT ERQHIETGLR QVLANEELQL HYQPQIDIRT GQVVSVEALV RWQHPEFGLI SPDRFISIAE EIDMIIPIGQ WVLETAMAQL AAWRAAGATR LRMAVNLSAH QLRKDTIVAD ITNVLLKHQL GKGALELEIT ESVAMQYPEQ NARLLAELRQ HGIELAIDDF GTGYSSLSYL KLLPLDRLKL DRSFVKDIET DPNDAAISAA TISMSHELGL TVVAEGVENE AQLVLLSSMG CDLVQGYYFS KPLPAEECFR FIQRNL
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