| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3853 |
|---|
| Symbol | |
|---|
| ID | 5081235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 4470098 |
|---|
| End bp | 4471462 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640501065 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001185358 |
|---|
| Protein GI | 146294934 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAACT CTTCTTTAGC ATGGCAAGTG ATAAACTCCC TTAAGGCTCG GTTAGTTGCC
AGTTCACTAC TGTTTATTTT AGTGCTATTA CCCTTGATTG GTGTCGGCTT AAATGATGCC
TTTACCGAGC AAGTGAAAAG TGCCGCAAAA AATGAACTCA GTGCCTATGT TTACTCAATA
CTCGCAGTAA CAGAAGTGGA AAATACGCAG ATCTCCATTC CTGAATTAGT GTTAGAAAAT
CGCTTTAATC TCATTCAATC AGGGCTCTAC GCCATAGCAA CCACACAAGA TCTCAATGGC
AAACAAAGTA TTGTATGGCA TTCGCAGTCT TTTATGGGCA TCACTCCTCC GGCATATTTT
ACGATTCCCG ACATGGGCAA AAGTACATTT GAGCAAATCA AGCTCGCCGA TCAGCCCCAT
TGGATTTACA GTTTTAGCGT TAGCTTTGCC AGCCAAAATC AGAACGTACC TGTAACCATC
CACATCATTA AAGACGAACA AGAATTCCAG CAGCAAATTG ACCAATTTAA TCAGCAGCTT
TGGACTTGGT TGTTGATCCT GATGTTAGTC ATGCTGGTAT TCCAGTTAAG TTGGTTACTC
TGGACGCTAC GCCCGCTAGC ACGTTTTACC CAAGAGCTGC ACGAGGTTGA ACAAGGTAAA
TCAATGCAGT TAAGTAGCCA ATACCCCACG GAGTTACAAG CAGTTGCACG CCAACTCAAT
ATTCTGCTCA ATACCGAACA AACCCAGCGA AAACGCTATC GCAACGCCTT AGCCGATCTT
GCCCATAGCC TAAAAACACC GCTCGCAGTG ATCAAAAGCC AAGCTGATTT AAGCGAAGCC
TCGAGTGAAC AAGTGTCGGT GATAAGCAGA ATCATTGGGC ACCAACTGAA ACGTGCTCAA
ACGGCAGCGG CAGCCTCCTG GCATTTAGGG ATCCGCGTCG ATGAGGTGGC GGCTAAGCTA
TTGCGTACTT TGACTAAAAT TTATCAAGAG CCGCAAATCC ATCTCCATTC TGAAATTGCC
GAACAAGCAG TATTCAAGGG GGATGACGCT GACCTCACTG AAATGTTGGG CAATTTACTC
GACAACGCCT GTAAAGCGGC AAAATCCACT GTTAAATTAA CTGTAACGGG TGATGCCTAT
CAACTGCAGA TCTGCATAGA AGATGATGGT CCAGGAATCA GTGAATCATT GAAAAATCAA
ATATTTGAAC GTGGAATTCG AGCAGATTCC TATCGCCAAG GTAATGGTAT AGGGCTTGCG
ATCGTTCGAG ATTTAGTCGA CAGCTATAAT GGCAGAATTT CAGTGTCGCA TTCAGAAACC
TTAGGTGGGG CCAAATTTAG CGTGAGTTTT GTGCACTCTA TTTAA
|
|---|
| Protein sequence | MSNSSLAWQV INSLKARLVA SSLLFILVLL PLIGVGLNDA FTEQVKSAAK NELSAYVYSI
LAVTEVENTQ ISIPELVLEN RFNLIQSGLY AIATTQDLNG KQSIVWHSQS FMGITPPAYF
TIPDMGKSTF EQIKLADQPH WIYSFSVSFA SQNQNVPVTI HIIKDEQEFQ QQIDQFNQQL
WTWLLILMLV MLVFQLSWLL WTLRPLARFT QELHEVEQGK SMQLSSQYPT ELQAVARQLN
ILLNTEQTQR KRYRNALADL AHSLKTPLAV IKSQADLSEA SSEQVSVISR IIGHQLKRAQ
TAAAASWHLG IRVDEVAAKL LRTLTKIYQE PQIHLHSEIA EQAVFKGDDA DLTEMLGNLL
DNACKAAKST VKLTVTGDAY QLQICIEDDG PGISESLKNQ IFERGIRADS YRQGNGIGLA
IVRDLVDSYN GRISVSHSET LGGAKFSVSF VHSI
|
|---|
| |