| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3780 |
|---|
| Symbol | |
|---|
| ID | 5081064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 4389382 |
|---|
| End bp | 4390002 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640500993 |
|---|
| Product | LexA repressor |
|---|
| Protein accession | YP_001185286 |
|---|
| Protein GI | 146294862 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
|---|
| TIGRFAM ID | [TIGR00498] SOS regulatory protein LexA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACCCT TAACGCCACG CCAAGCTGAA ATTTTAGAGC TAATTAAACG TAATATTGCC
GATACAGGAA TGCCACCCAC CCGAGCAGAA ATTGCCACTC GTTTAGGCTT TAAAAGTGCT
AATGCTGCTG AGGAGCACCT CAAAGCTCTC GCCAAAAAAG GCTGTATCGA AATCATGCCT
GGTACCTCTC GGGGTATCCG TCTCCCAGCA GAGGAAGAGG TCGTGGTTGA ATATGGCCTG
CCACTTATAG GCCAAGTAGC CGCTGGTGAG CCAATCTTGG CTCAAGAACA TGTTGAACAG
TATTATCAAG TTGACCCAAG TATGTTCCAC CCTACCGCCG ATTTTTTACT GCGAGTAAAA
GGTGACAGCA TGAAAAACAT CGGCATTCTC GAAGGTGATT TGTTAGCGGT GCATAAAGTA
CAACAAGCGA GAAATGGTCA AGTAGTTGTT GCAAGAGTCG ACGATGATGT CACGGTTAAA
CGCTTCGAAA AAAAAGGCAA CTTAGTCTAT CTATACGCAG AAAATGAAGA CTACTCACCA
ATTAAAGTGG ATTTAAGTTG TCAAAGTTTA ACAATTGAAG GACTCGCTGT TGGTGTGATC
CGTAATGGAG ATTGGCTATG A
|
|---|
| Protein sequence | MRPLTPRQAE ILELIKRNIA DTGMPPTRAE IATRLGFKSA NAAEEHLKAL AKKGCIEIMP
GTSRGIRLPA EEEVVVEYGL PLIGQVAAGE PILAQEHVEQ YYQVDPSMFH PTADFLLRVK
GDSMKNIGIL EGDLLAVHKV QQARNGQVVV ARVDDDVTVK RFEKKGNLVY LYAENEDYSP
IKVDLSCQSL TIEGLAVGVI RNGDWL
|
|---|
| |