Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_3766 |
Symbol | rpoB |
ID | 5081046 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 4371070 |
End bp | 4375101 |
Gene Length | 4032 bp |
Protein Length | 1343 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640500975 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001185272 |
Protein GI | 146294848 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0265779 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ACTTTGGTAA GCGTCCACAG GTGTTGGATA TTCCTTACCT TTTGTCTATT CAGTTAGACT CTTTTAAGAA GTTCACCGAT CAAGATCCTA CCGGTGAGCG CGGTCTTGAA GCCGCCTTCC GTAGCGTTTT TCCCATCAAG AGCTTTTCTG GTAATTCAGA ACTGCAATAC GTCAGCTATA AGCTTGGCGA GCCTGTTTTT GATGTGAAAG AGTGTCAGAT CCGCGGTGTT ACGTATTCAG CACCACTACG CGTTAAATTA CGCATGGTGT TGTATGACCG TGAAGCAGCG GCAGGCACTG TAAAAGATAT TAAAGAGCAA GAAGTCTACA TGGGCGATAT CCCATTGATG ACGGATAACG GTACCTTTGT TATCAACGGT ACTGAGCGTG TAATCGTATC TCAATTACAC CGTAGCCCTG GCGTGTTCTT CGATCATGAC CGTGGTAAAA CCCACTCATC GGGTAAGGTG CTGTATAACG CACGTATTAT TCCTTACCGT GGTTCATGGC TTGACTTTGA ATTCGATCCT AAAGATGCAC TTTTCGTACG TATTGACCGT CGCCGTAAAT TACCAGCGAC CATCATTCTG CGTGCATTAG AATACTCTAC TCAAGAGATC CTCGACCTGT TCTTCGAACG TGTTGAGTTC AAGATCAAGA AAGATACGTT AGTCATGGCG TTAGTTCCTG AGCGTCTGCG TGGCGAAACT GCCAGCTATG ACATCAAGGA TGCTGAAGGT TCTGTGCTGG TTGAAGCGGG CCGTCGTATT ACTGCGCGCC ATATTCGCCA GTTAGAAAAG ACTAATACCA CTGAACTCGA AGTGCCAGTT GAATATATCG TGGGCAAATA TGCTGCTCAA GATTATATCG ATCCGGACAC GGGTGAAGTT TTAGTATCTG CAAACAGTGA AATCAGCTTA GAAGACTTAG CGAAATTATC ACTGGCTGGC ATTAAAGATA TCAGCACGTT GTATATCAAC GAGCTAGATC ATGGTGCTTA TATTTCAGAT ACGCTGCGTA TCGATTCAAC CACTAACCGC TTAGAAGCGC TGGTTGAAAT CTATCGTATG ATGCGTCCTG GCGAGCCACC AACCAAAGAT GCGGCAGAAG CACTATTCCA GAACTTGTTC TTCAGTGAAG AACGCTATGA CCTGTCTAAA GTCGGTCGTA TGAAGTTCAA CCGTCGTCTG AGCATCCCCG ATGACGAAGG TAGCGGTGTA TTGTCTAAAG AAGACATCGT CGCGGTAATG AAGAACATCA TTCATATCCG TAACGGTTTC GACGAAGTCG ATGACATCGA TCACTTAGGT AACCGTCGTA TTCGTAGCGT CGGTGAAATG GCTGAAAACC AATTCCGTGT TGGTTTAGTC CGTGTTGAGC GCGCTGTGCG TGAACGTCTA TCTTTAGGCG ATCTGAACGA GCTGATGCCA CAAGACTTAA TCAACGCTAA GCCAATTTCT GCTGCAGTGA AAGAGTTCTT CGGTTCTTCA CAGCTGTCAC AATTCATGGA CCAAAACAAC CCGCTGTCAG AAGTCACGCA TAAGCGTCGT ATTTCTGCTC TTGGCCCTGG TGGTTTGACT CGTGAACGTG CAGGCTTTGA AGTCCGTGAC GTACATCCAA CGCATTATGG TCGTTTATGT CCAATTGAGA CCCCTGAAGG TCCAAACATT GGTCTAATCA ACTCATTAGC AAGTTTTGCC CGTACTAACT CATACGGCTT CTTAGAAACG CCATACCGCA AGGTGATTGA TGGCGTGATT ACTGACGAAG TGGAATACTT GTCAGCGATT GAAGAAGGTC GTTATGTCAT TGCACAGGCA AACATCGAAG TTGATGCAAA TGGCCGCATG GTTGAAGAGC AGATCGCCTG TCGTCATAAA GGTGAATCTA CCTTTATGCG CGCATCTGAT ATTCAATACA TGGACGTATC GCCACAACAG ATTATTTCTG TTGCTGCATC ACTGATCCCG TTCTTAGAAC ACGACGACGC TAACCGTGCA TTGATGGGTG CGAACATGCA ACGTCAAGCC GTACCCACAC TGCGCTCTGA AAAGCCATTA GTCGGTACTG GTATTGAACG TACGCTAGCT GTTGATTCTG GTGTTGTAGT TGTTGCTAAG CGTGGTGGTT ATATCGACTA CGTTGATGCG AGCCGTATCG TTGTTAAAGT CAATGAAGAT GAGCTACGTC CAGGCGAAGC GGGTATCGAC ATTTATAACC TGACTAAATA CACCCGGTCT AACCAAAATA CTTGTATCAA CCAGCGCCCT TGTTGTGCCG TTGGTGAGCC AGTCGTTCGT GGTGACGTGT TAGCAGACGG TCCGTCTACT GACTTAGGTG ACTTAGCTCT TGGCCAGAAC ATGCGCATCG CGTTCATGCC TTGGAACGGT TACAACTTCG AAGACTCGAT CTTAATTTCT GAGCGCGTAG CACAGGAAGA CCGTTTCACC ACTATCCACA TCCAAGAGCT GTCTTGTATT GCTCGTGATA CCAAACTGGG TAGCGAAGAA ATCACCGCTG ATATTCCAAA CGTAGGTGAA TCTGCTCTGT CGAAACTCGA CGAATCAGGT ATCGTTTATA TTGGTGCAGA AGTGAAGGGT GGCGATATTC TGGTCGGTAA AGTGACGCCA AAAGGCGAAA CTCAGCTAAC ACCAGAAGAG AAGTTACTCC GTGCTATCTT CGGTGAGAAA GCGTCTGATG TGAAAGACAG CTCACTGCGT GTACCTAACT CTGTTAAGGG CACTATCATC GACGTTCAGG TATTTACCCG TGACGGCGTT GAAAAAGATA AACGTGCAGT TGAAATCGAA GAGATGCACA TCGCTCAAGC ACGTAAAGAC TTAAGCGAAG AGTTCAAGAT CCTTGAAGAA GGTGTATTGA GCCGTGCTCG TAACCTATTG TTAGGTGCAG GTTTCACAGA AACACAAATC GCAGCGATGC CACGTAAGGA TGTATTGGTT CAAGTTATTG ACGATGAAGC AAAACAAACT GAACTTGAGC AATTAGCTGA GCAGCATGAA GAGCTGAAAG CAGACTTCGA TAAGAAGTTT GAAATTAAAC GTCGCAAGAT CACCCAAGGT GATGACTTGG CGCCAGGCGT ACTGAAGATC GTTAAGGTTT ACTTAGCGGT TAAGCGTACT ATCCAACCTG GTGACAAGAT GGCGGGTCGT CATGGTAACA AAGGTGTTAT CTCTAAGATT TGCCCAATCG AAGACATGCC ATATGACGAA CAAGGTAATC CAGTAGACAT CGTATTGAAC CCACTAGGTG TTCCGTCACG GATGAACATT GGTCAGGTAC TTGAAGTCCA TATGGGCGCC GCCGCTAAAG GTATTGGTAA CAAGATCACT GCAATGCTTG AAGAACAGCG CGAGCTGGCT GAAGTACGCG GTTACATCAA ACAAGTGTAT GAGTTAGGTG ACGAAGTGCA GCAGCGCGTC GATATCGATT CATTCACCGA TGATGAAGTG ATGCGTCTTG CCCAAAACTT GAAGGGTGGT ATCCCGATTG CGACTCCTGC ATTCGACGGT GCTAAAGAGA AAGAGATCAA GCAGATGCTT GAGCTTGCAG GCTTGCCAAC CTCTGGTCAG CTGAAGTTGT ATGATGGTCG TACCGGTAAC GAATTTGAGC GTCAAGTAAC CGTTGGTTAC ATGTACATGC TCAAACTGAA CCACTTAGTT GATGACAAGA TGCACGCCCG TTCTACCGGT TCGTACAGCT TAGTGACTCA ACAACCACTG GGCGGTAAAG CTCAGTTCGG TGGTCAGCGT TTCGGTGAGA TGGAAGTGTG GGCACTAGAA GCATACGGTG CCGCTTATAC GCTTCAAGAA ATGCTCACTG TGAAATCGGA TGACGTTAAC GGTCGTACTC AGATGTATAA GAACATCGTC GACGGTAACC ATCAGATGCA ACCTGGCATG CCAGAGTCCT TCAACGTGTT ACTGAAGGAG ATCCGTTCAC TCGGTATTAA TATCGAGTTG GATCAGGAAT AA
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Protein sequence | MVYSYSEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFKKFTD QDPTGERGLE AAFRSVFPIK SFSGNSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLYDREAA AGTVKDIKEQ EVYMGDIPLM TDNGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR GSWLDFEFDP KDALFVRIDR RRKLPATIIL RALEYSTQEI LDLFFERVEF KIKKDTLVMA LVPERLRGET ASYDIKDAEG SVLVEAGRRI TARHIRQLEK TNTTELEVPV EYIVGKYAAQ DYIDPDTGEV LVSANSEISL EDLAKLSLAG IKDISTLYIN ELDHGAYISD TLRIDSTTNR LEALVEIYRM MRPGEPPTKD AAEALFQNLF FSEERYDLSK VGRMKFNRRL SIPDDEGSGV LSKEDIVAVM KNIIHIRNGF DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLASFA RTNSYGFLET PYRKVIDGVI TDEVEYLSAI EEGRYVIAQA NIEVDANGRM VEEQIACRHK GESTFMRASD IQYMDVSPQQ IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLRSEKPL VGTGIERTLA VDSGVVVVAK RGGYIDYVDA SRIVVKVNED ELRPGEAGID IYNLTKYTRS NQNTCINQRP CCAVGEPVVR GDVLADGPST DLGDLALGQN MRIAFMPWNG YNFEDSILIS ERVAQEDRFT TIHIQELSCI ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE KLLRAIFGEK ASDVKDSSLR VPNSVKGTII DVQVFTRDGV EKDKRAVEIE EMHIAQARKD LSEEFKILEE GVLSRARNLL LGAGFTETQI AAMPRKDVLV QVIDDEAKQT ELEQLAEQHE ELKADFDKKF EIKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI CPIEDMPYDE QGNPVDIVLN PLGVPSRMNI GQVLEVHMGA AAKGIGNKIT AMLEEQRELA EVRGYIKQVY ELGDEVQQRV DIDSFTDDEV MRLAQNLKGG IPIATPAFDG AKEKEIKQML ELAGLPTSGQ LKLYDGRTGN EFERQVTVGY MYMLKLNHLV DDKMHARSTG SYSLVTQQPL GGKAQFGGQR FGEMEVWALE AYGAAYTLQE MLTVKSDDVN GRTQMYKNIV DGNHQMQPGM PESFNVLLKE IRSLGINIEL DQE
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