| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3765 |
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| Symbol | |
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| ID | 5081045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 4366769 |
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| End bp | 4370986 |
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| Gene Length | 4218 bp |
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| Protein Length | 1405 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640500974 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001185271 |
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| Protein GI | 146294847 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00574145 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAGACT TATTAAAGTT TCTGAAACAG CAAAGCAAGA CTGAAGAATT TAACGGCATC
AAAATTGGTC TGGCATCGCC TGATCTGATC CGTTCTTGGT CTTTTGGTGA AGTTAAGAAG
CCAGAAACCA TCAACTACCG TACCTTCAAG CCTGAGCGTG AAGGTCTGTT CTGTGCGCGT
ATCTTTGGCC CAGTCAAAGA TTACGAATGT TTGTGCGGTA AGTACAAACG TCTGAAGCAC
CGTGGTGTTA TTTGTGAAAA GTGTGGCGTT GAAGTCACCC AGACTAAAGT ACGTCGTGAG
CGTATGGGTC ACATCGAACT GGCTAGCCCA GTCGCGCACA TTTGGTTCTT AAAATCACTG
CCGTCCCGTA TCGGTTTAAT GCTCGATATG ACGCTGCGTG ATATCGAACG CGTACTGTAT
TTTGAATCAT TCGTCGTGAT CGAGCCTGGC ATGACCAGCC TTGAACGTGG TCAAATGCTG
ACAGAAGAAA CGTATCTGGA TGCGTTAGAA GAATACGGTG ATGAGTTCGA AGCGAAAATG
GGTGCCGAAG CTGTTCTAGA ACTGCTGCGC GCTATCGATT TAGCGAAAGA AATCGAACAA
ATGCGTGAAG AATTACCTTC AATCAACTCT GAGACTCGTC GCAAGAAAGT GACTAAACGT
CTTAAGTTGA TGGAAGCCTT CTTCACTTCA GGCAACAAGC CTGAATGGAT GATCTTAAAA
GTACTGCCTG TGTTACCGCC TGACTTACGT CCGCTGGTAC CGCTCGATGG CGGCCGCTTC
GCGACTTCAG ATCTTAACGA CCTGTATCGC CGCGTGATCA ACCGTAACAA CCGTTTGAAG
CGTCTGTTAG ATTTAGCTGC GCCAGACATT ATCGTACGCA ACGAAAAGCG TATGTTACAA
GAGTCTGTTG ATGCGCTATT AGATAACGGT CGTCGTGGTC GTGCAATTAC CGGTTCTAAC
AAGCGTCCTC TGAAATCTTT GGCCGATATG ATCAAAGGTA AACAAGGTCG TTTCCGTCAG
AACTTGTTGG GTAAACGCGT TGACTATTCT GGTCGTTCGG TCATTACCGT AGGTCCTACT
TTACGTCTGC ACCAATGTGG TCTTCCTAAG AAGATGGCAC TGGAACTGTT CAAACCATTT
ATCTATGGCA AGCTGGAAGG TCGTGGCTTA GCGACTACCA TCAAAGCGGC TAAGAAGATG
GTTGAGCGTG AAGTGGCGGA AGTTTGGGAC GTTCTGGATG AAGTGATCCG CGAACATCCA
GTAATGCTTA ACCGTGCACC AACACTGCAC AGATTAGGTA TTCAAGCGTT CGAACCTGTA
CTGATTGAAG GTAAAGCCAT CCAGTTACAC CCACTCGTTT GTGCGGCATA CAACGCCGAC
TTCGACGGTG ACCAAATGGC GGTACACGTA CCGTTAACAC TGGAAGCGCA GCTTGAAGCC
CGTGCCCTGA TGATGTCTAC CAACAACATC CTGTCACCAG CCAACGGCGA GCCTGTTATC
ACCCCGTCTC AAGACGTGGT ATTGGGTCTG TACTACACCA GCCGTGAGCG TATTAACGGC
CGTGGTGAAG GTATGGCATT TATGTCTGTT GCTGAAGTTG AAAAAGCTTA CGCAACTGGC
GCTGCTGAAC TGCATGCCCG CGTTAAAGTT CGTATCACTG AAACCATTAT TGGTGATGAT
GGTGAGCGCA CTGAACAACG CCGTATCGTT GATACGACTG TGGGTCGTGC TCTGCTGTCA
CTTATTCTGC CAGCAGGTTT GTCATTTGAT CTGGTTAACC AGAACATGGG CAAAAAGCAG
ATCTCTAAAC TGTTGAACAC CTGTTATCGT CAACTGGGTC TGAAAGATAC TGTTATCTTC
GCTGACCAAT TGATGTATAC CGGTTTCCGT TTTGCAACCA TCTCTGGTGC CTCTGTCGGT
ATCGATGACA TGGTTATTCC AGACGAGAAA TACACCTTAG TTGCTGATGC AGAAGCTGAA
GTTCTTGAAA TTCAAGAGCA GTTCCAATCT GGTCTAGTCA CAGCCGGTGA GCGTTACAAC
AAAGTTATCG ATATCTGGGC AAGTGCCAAC GAAAAAGTTT CTAAAGCTAT GATGGAAAAC
CTGTCAACTG AGACAGTGAT TAACCGTGAT GGCGTTGAAG AGAAACAAGC CTCGTTTAAC
AGCATCTATA TGATGGCTGA CTCAGGCGCT CGTGGTAGTG CTGCACAGAT CCGTCAGTTG
GCGGGTATGC GTGGTCTGAT GGCGAAACCT GACGGCTCAA TCATCGAAAC GCCAATTACC
GCTAACTTCC GTGAAGGTCT AAACGTACTC CAGTACTTTA TTTCTACTCA CGGTGCGCGT
AAAGGTCTTG CCGATACTGC ATTGAAAACA GCGAACTCGG GTTACCTGAC TCGTCGTCTT
GTAGACGTTG CACAAGATTT AGTGGTTATC GAAGACGATT GTGGTACTCA CGAAGGTCTA
ACCATGAAAC CGCTGATTGA AGGTGGTGAT GTGGTTGAGC CGTTACGTGA ACGCGTACTG
GGTCGTGTGG TTGCCGTTGA TGTGTTCTAT CCAGGCACCG AAGATGTACT AGCACCACGT
AACACGCTGC TCGATGAAGC ATGGTGTGAC AAGTTAGAAG AGCATTCAAT CGATGAAGTG
ATTGTGCGTT CTGTGATTAC CTGTGATACC GATTTCGGTG TCTGTGCAGC CTGTTATGGA
CGTGACTTGG CCCGTGGTCA TATCATCAAC CATGGTGAGG CCATCGGTGT TGTGGCAGCA
CAATCTATCG GTGAACCAGG TACACAGTTA ACGATGCGTA CGTTCCACAT CGGTGGTGCG
GCATCTCGTG CGTCTGCAGA AAACAATGTC CAAGTGAAAA ACTCGGGTTC ATTGAAACTG
CATAATGCTA AGCATGTTAC TAACAGCGAC GGCAAACTGG TTATCGTTTC TCGTTCTTCT
GAGCTGGCCA TCATCGATGA GTTAGGTCGT GAGAAAGAGC GTTACAAAGT GCCATACGGT
ACTGTGCTTG AGAAATTGGA AGAAGCTGCG GTTGAAGCGG GCGATATTAT CGCTAACTGG
GATCCACATA CTCACCCAAT CATTTCTGAA GTGGCGGGTA GTATCAAGTT CGTCGATATG
ATTGACGGTG TCACTATGAC ACGTCAAACA GACGAACTAA CGGGTCTATC ATCAATCGTG
ATCCTTGACG TCGGTCAGCG TGGTACAGCG GGTAAAGAAA TGCGCCCAAT GATCCGTCTG
CTTGGCGCTA ATGGTAGCGA TCTGATGATC CCTGGTACAG AAGTGCCAGC ACAGTACTTC
TTACCTGGTA GTGCGATTGT TAACCTTGAC GACAACGCGC AAATTGCCGT AGGTGACGCT
TTAGCACGTA TTCCACAGGA ATCGTCTAAA ACACGCGACA TCACCGGTGG TCTGCCACGC
GTTGCTGACC TGTTCGAAGC GCGTAAGCCA AAAGAACCTG CTATTCTGGC AGAAATCTCT
GGTACCATCT CGTTTGGTAA AGAGACCAAA GGTAAGCGTC GTTTGGTCAT TACACCTGCT
GATGGCGGCG ATCAATATGA AGAGATGATC CCTAAATGGC GTAACTTAAA CGTGTTCGAA
GGTGAAAAAG TCGAACGTGG TGAAGTTATC GCTGACGGTC CAGAAGCGGC ACATGACATT
CTGCGTCTGC GCGGTATCCA CAATGTAGCA AACTACATTG TGAACGAAGT TCAAGACGTT
TACCGTCTGC AAGGCGTGAA GATCAACGAT AAGCATATCG AAGTCATCAT CCGTCAAATG
CTACGTAAGT GCTTGATCAC TTCTGCGGGT GACACAGAGT TCTTAGAAGG TGAGCAAGTT
GAAGTGTCTC GCGTTAAGAT CGCAAACCGC GAACTTATCG CACAGGGTAA AGTACCTGCG
ACCTTCGAAC GTGAACTGCT AGGTATTACT AAAGCGTCTC TGGCAACAGA ATCGTTTATC
TCTGCAGCGT CGTTCCAAGA AACTACGCGC GTACTGACTG AAGCCGCCGT AGGTGGTAAG
AGTGATCAAC TACGTGGTCT GAAAGAAAAC GTTATCGTTG GTCGTTTGAT CCCAGCCGGT
ACAGGTTATG CTTATCACAA GACCCGCAAT GATGCTCGCG CTAAGAAAGA CGAGCCAGTT
GTTGTGAATA AAGTCACTGC TAGTGAAGCT GAACAGAACC TCGCTGATCT CTTAAACATG
GCCGGTAGCC AAGATTAA
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| Protein sequence | MKDLLKFLKQ QSKTEEFNGI KIGLASPDLI RSWSFGEVKK PETINYRTFK PEREGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP VAHIWFLKSL
PSRIGLMLDM TLRDIERVLY FESFVVIEPG MTSLERGQML TEETYLDALE EYGDEFEAKM
GAEAVLELLR AIDLAKEIEQ MREELPSINS ETRRKKVTKR LKLMEAFFTS GNKPEWMILK
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IYGKLEGRGL ATTIKAAKKM VEREVAEVWD VLDEVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPVI TPSQDVVLGL YYTSRERING RGEGMAFMSV AEVEKAYATG
AAELHARVKV RITETIIGDD GERTEQRRIV DTTVGRALLS LILPAGLSFD LVNQNMGKKQ
ISKLLNTCYR QLGLKDTVIF ADQLMYTGFR FATISGASVG IDDMVIPDEK YTLVADAEAE
VLEIQEQFQS GLVTAGERYN KVIDIWASAN EKVSKAMMEN LSTETVINRD GVEEKQASFN
SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVI EDDCGTHEGL TMKPLIEGGD VVEPLRERVL
GRVVAVDVFY PGTEDVLAPR NTLLDEAWCD KLEEHSIDEV IVRSVITCDT DFGVCAACYG
RDLARGHIIN HGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRASAENNV QVKNSGSLKL
HNAKHVTNSD GKLVIVSRSS ELAIIDELGR EKERYKVPYG TVLEKLEEAA VEAGDIIANW
DPHTHPIISE VAGSIKFVDM IDGVTMTRQT DELTGLSSIV ILDVGQRGTA GKEMRPMIRL
LGANGSDLMI PGTEVPAQYF LPGSAIVNLD DNAQIAVGDA LARIPQESSK TRDITGGLPR
VADLFEARKP KEPAILAEIS GTISFGKETK GKRRLVITPA DGGDQYEEMI PKWRNLNVFE
GEKVERGEVI ADGPEAAHDI LRLRGIHNVA NYIVNEVQDV YRLQGVKIND KHIEVIIRQM
LRKCLITSAG DTEFLEGEQV EVSRVKIANR ELIAQGKVPA TFERELLGIT KASLATESFI
SAASFQETTR VLTEAAVGGK SDQLRGLKEN VIVGRLIPAG TGYAYHKTRN DARAKKDEPV
VVNKVTASEA EQNLADLLNM AGSQD
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