Gene Sputcn32_3735 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_3735 
SymbolrpsD 
ID5079122 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp4349727 
End bp4350347 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content46% 
IMG OID640500944 
Product30S ribosomal protein S4 
Protein accessionYP_001185241 
Protein GI146294817 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0522] Ribosomal protein S4 and related proteins 
TIGRFAM ID[TIGR01017] ribosomal protein S4, bacterial/organelle type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000110035 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAGAT ACTTGGGTCC CAAGCTCAAG CTCAGCCGCC GAGAAGGTAC AGACCTTTTC 
TTAAAAAGCG GTGTGAGAGC AATCGATTCA AAGTGTAAAC TGGAAACTGC ACCTGGACAA
CATGGCGCTC GTAAGCCACG TCTGTCTGAG TATGGTACTC AGTTACGCGA AAAACAAAAA
GTTCGTCGTA TTTACGGTGT GTTAGAAAAA CAATTCCGTA ACTATTACAA AGATGCTGCA
CGTCTGAAAG GCAACACTGG TGAAAACCTG TTGCAACTTT TAGAAACCCG TTTAGATAAC
GTTGTTTATC GTATGGGCTT CGGTGCTACT CGTGCAGAAT CACGTCAGCT AGTAAGCCAT
AAATCAGTTA TGGTTAACGG TCGTGTTGTT AACATTCCGT CATTCAAAGT GTCTGCGAAT
GATGTTGTGA GCATCCGCGA GAAGTCACGC ACTCAAGCTC GTATTAAAGC GGCTTTAGAA
GTGGCAGCTC AACGCGAGAA GCCTACATGG GTTGAAGTCG ACAGCGCGAA AATGGAAGGT
GCTTTCAAGC GCGTTCCAGA ACGTAGCGAT TTGTCTGCGG AAATTAACGA ACAGCTGATC
GTCGAGCTTT ACTCTAAGTA A
 
Protein sequence
MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKLETAPGQ HGARKPRLSE YGTQLREKQK 
VRRIYGVLEK QFRNYYKDAA RLKGNTGENL LQLLETRLDN VVYRMGFGAT RAESRQLVSH
KSVMVNGRVV NIPSFKVSAN DVVSIREKSR TQARIKAALE VAAQREKPTW VEVDSAKMEG
AFKRVPERSD LSAEINEQLI VELYSK