Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_3724 |
Symbol | |
ID | 5079111 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 4340521 |
End bp | 4342500 |
Gene Length | 1980 bp |
Protein Length | 659 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640500934 |
Product | cytochrome c-type biogenesis protein CcmF |
Protein accession | YP_001185231 |
Protein GI | 146294807 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1138] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF [TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00953615 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCCCAG AACTTGGACA CTTTTCGTTG ATAATCGGAG TGGCTTTTGC CTTTCTGCTC GTCAGCGTTC CCCTTATTGG TGTTGCCCGT AAAGATCAAT ATCTTGTGAG GTATGCTTGG CCGTTAGCTT ACGGAATGTT CTTTTTTATC AGTTTATCCG TTGTTTCACT TGGTTATAGC TTTGCTGTTG ATGATTTCTC CGTCGCTTAT GTGGCTCATC ACTCTAACTC CCAGTTACCT ATCTTCTTTA AGATTGCGGC CGTATGGGGC GGTCACGAAG GGTCGCTGCT ATTTTGGGTG TTTTCATTAG CAACTTGGGC CGCTTCTGTT GCTTTATTCA GTAAAGGTTT AGAAGAAGTG TTCACCGCAC GTGTACTTGC AGTTCTGGCA GTAATCGTGA TTGGTTTTAG TTTGTTTATG TTGCTCACAT CAAGCCCATT TGAGCGTTTA TTCCCCATGC CTGCAGAAGG TCGTGACTTA AACCCAATGC TGCAGGATGT GGGCTTAATA TTCCATCCAC CTATGCTGTA TTTGGGCTAT GTTGGTTTTT CTGTAAGCTT TGCTTTTGCT ATTGCGGCAT TGATGAGTGG ACGTCTTGAT TCTGCATGGG CTCGTTGGTC TCGTCCTTGG ACCTTGGCTG CATGGGTATT CCTCACGGGC GGTATTTCTT TAGGCTCTTG GTGGGCATAT TACGAATTAG GCTGGGGTGG TTGGTGGTTC TGGGATCCTG TTGAGAATGC CTCTTTCATG CCTTGGTTAG TGGGTACTGC GCTTGTGCAC TCTTTGATTG TGACCGAGAA ACGCGGTGCC TTCCGTAACT GGACGGTATT GCTTTCCATC TTTGCTTTCT CTTTAAGCTT GCTTGGTACC TTTATTGTTC GCTCTGGCGT ATTAACCTCA GTGCATTCAT TTGCGGCAGA TCCAAGCCGT GGTATGTTCA TTCTGTTGTT ACTTGGTTTA GCCATTGGTG GTTCTTTAAC ACTCTTTGCT TTCCGTGCCA GCGAAATGAG TAGCCCAGCA CGTTTCGAGT TGAAGTCTAA AGAAACTATG CTGCTGATTT GTAACGTTCT GTTGACTGTT GCTACAGGTA CTGTGTTATT AGGCACTTTA TACCCACTGC TGATTGATGC ACTTGGTATG GGTAAAATTT CTGTAGGGCC TCCATATTTC AATGCTGTAT TTGTGCCTAT CGTTTTAGTG TTGTTTGCTT TTATGGGTGT AGGTCCAATT ATTCGCTGGA AAAAATCGAA GGCTGGCGAG CTTAGACGCC AACTACTGAT CCCAGCTCTA ATTTCTGTCG CGATAGGGAT AGTGACACCA TTTATAGTTG ATGGTGCATT TAACGCGTGG GTTGCATTTG GTATTGCAGC GGCGGTATGG ATCATACTTG CTACGGCAAG AGCCGCTTAT AATATTGTTA AACCTAAAGA AGGTGATATT AGTGTTGCTC GTATGGGGCG CAGTCAATTT GGGATGATCT TGGCCCACTT CGGCATTGCC GTCTCTGTTA TTGGTGCCAC TATGGTATCT AACTATTCAG TTGAGAAAAG TGTCCGTATG GGACCAGGGG TTAGTCAAGA GTTAGCTGGT TATACCTTTA AGTATTTAGA GACAAAAAAT GTCGTTGGCC CAAATTACAC AGCTCAGCAG GGGCAAATTG AAATCTATAA AGATGACAAA TTGTTAACAC TGCTAAAGCC TGATCGCCGT CAATACAATG TACGAACCAT GGATATGACC GAAGCTGGTA TTGATTGGGG TCTGTTCCGT GATTTGTATG TGACTATGGG TGACCCTATC AGTGCAACAG AGTTTGCGGT ACGTTTGAAC TATAAACCCT TTGTCCGTTG GTTGTGGTTT GGATCGATTT TTATGATGAT TGGTGGTTTC TTCGCTGCAT CAGATAAGCG TTATCGCTCA AAAGTGGCGG CGATTGTTAA GCCACAAGTA GATAAAGCTA AACTGGCAAC CGCTCAATAG
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Protein sequence | MIPELGHFSL IIGVAFAFLL VSVPLIGVAR KDQYLVRYAW PLAYGMFFFI SLSVVSLGYS FAVDDFSVAY VAHHSNSQLP IFFKIAAVWG GHEGSLLFWV FSLATWAASV ALFSKGLEEV FTARVLAVLA VIVIGFSLFM LLTSSPFERL FPMPAEGRDL NPMLQDVGLI FHPPMLYLGY VGFSVSFAFA IAALMSGRLD SAWARWSRPW TLAAWVFLTG GISLGSWWAY YELGWGGWWF WDPVENASFM PWLVGTALVH SLIVTEKRGA FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASEMSSPA RFELKSKETM LLICNVLLTV ATGTVLLGTL YPLLIDALGM GKISVGPPYF NAVFVPIVLV LFAFMGVGPI IRWKKSKAGE LRRQLLIPAL ISVAIGIVTP FIVDGAFNAW VAFGIAAAVW IILATARAAY NIVKPKEGDI SVARMGRSQF GMILAHFGIA VSVIGATMVS NYSVEKSVRM GPGVSQELAG YTFKYLETKN VVGPNYTAQQ GQIEIYKDDK LLTLLKPDRR QYNVRTMDMT EAGIDWGLFR DLYVTMGDPI SATEFAVRLN YKPFVRWLWF GSIFMMIGGF FAASDKRYRS KVAAIVKPQV DKAKLATAQ
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