Gene Sputcn32_3724 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_3724 
Symbol 
ID5079111 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp4340521 
End bp4342500 
Gene Length1980 bp 
Protein Length659 aa 
Translation table11 
GC content45% 
IMG OID640500934 
Productcytochrome c-type biogenesis protein CcmF 
Protein accessionYP_001185231 
Protein GI146294807 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1138] Cytochrome c biogenesis factor 
TIGRFAM ID[TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00953615 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCCCAG AACTTGGACA CTTTTCGTTG ATAATCGGAG TGGCTTTTGC CTTTCTGCTC 
GTCAGCGTTC CCCTTATTGG TGTTGCCCGT AAAGATCAAT ATCTTGTGAG GTATGCTTGG
CCGTTAGCTT ACGGAATGTT CTTTTTTATC AGTTTATCCG TTGTTTCACT TGGTTATAGC
TTTGCTGTTG ATGATTTCTC CGTCGCTTAT GTGGCTCATC ACTCTAACTC CCAGTTACCT
ATCTTCTTTA AGATTGCGGC CGTATGGGGC GGTCACGAAG GGTCGCTGCT ATTTTGGGTG
TTTTCATTAG CAACTTGGGC CGCTTCTGTT GCTTTATTCA GTAAAGGTTT AGAAGAAGTG
TTCACCGCAC GTGTACTTGC AGTTCTGGCA GTAATCGTGA TTGGTTTTAG TTTGTTTATG
TTGCTCACAT CAAGCCCATT TGAGCGTTTA TTCCCCATGC CTGCAGAAGG TCGTGACTTA
AACCCAATGC TGCAGGATGT GGGCTTAATA TTCCATCCAC CTATGCTGTA TTTGGGCTAT
GTTGGTTTTT CTGTAAGCTT TGCTTTTGCT ATTGCGGCAT TGATGAGTGG ACGTCTTGAT
TCTGCATGGG CTCGTTGGTC TCGTCCTTGG ACCTTGGCTG CATGGGTATT CCTCACGGGC
GGTATTTCTT TAGGCTCTTG GTGGGCATAT TACGAATTAG GCTGGGGTGG TTGGTGGTTC
TGGGATCCTG TTGAGAATGC CTCTTTCATG CCTTGGTTAG TGGGTACTGC GCTTGTGCAC
TCTTTGATTG TGACCGAGAA ACGCGGTGCC TTCCGTAACT GGACGGTATT GCTTTCCATC
TTTGCTTTCT CTTTAAGCTT GCTTGGTACC TTTATTGTTC GCTCTGGCGT ATTAACCTCA
GTGCATTCAT TTGCGGCAGA TCCAAGCCGT GGTATGTTCA TTCTGTTGTT ACTTGGTTTA
GCCATTGGTG GTTCTTTAAC ACTCTTTGCT TTCCGTGCCA GCGAAATGAG TAGCCCAGCA
CGTTTCGAGT TGAAGTCTAA AGAAACTATG CTGCTGATTT GTAACGTTCT GTTGACTGTT
GCTACAGGTA CTGTGTTATT AGGCACTTTA TACCCACTGC TGATTGATGC ACTTGGTATG
GGTAAAATTT CTGTAGGGCC TCCATATTTC AATGCTGTAT TTGTGCCTAT CGTTTTAGTG
TTGTTTGCTT TTATGGGTGT AGGTCCAATT ATTCGCTGGA AAAAATCGAA GGCTGGCGAG
CTTAGACGCC AACTACTGAT CCCAGCTCTA ATTTCTGTCG CGATAGGGAT AGTGACACCA
TTTATAGTTG ATGGTGCATT TAACGCGTGG GTTGCATTTG GTATTGCAGC GGCGGTATGG
ATCATACTTG CTACGGCAAG AGCCGCTTAT AATATTGTTA AACCTAAAGA AGGTGATATT
AGTGTTGCTC GTATGGGGCG CAGTCAATTT GGGATGATCT TGGCCCACTT CGGCATTGCC
GTCTCTGTTA TTGGTGCCAC TATGGTATCT AACTATTCAG TTGAGAAAAG TGTCCGTATG
GGACCAGGGG TTAGTCAAGA GTTAGCTGGT TATACCTTTA AGTATTTAGA GACAAAAAAT
GTCGTTGGCC CAAATTACAC AGCTCAGCAG GGGCAAATTG AAATCTATAA AGATGACAAA
TTGTTAACAC TGCTAAAGCC TGATCGCCGT CAATACAATG TACGAACCAT GGATATGACC
GAAGCTGGTA TTGATTGGGG TCTGTTCCGT GATTTGTATG TGACTATGGG TGACCCTATC
AGTGCAACAG AGTTTGCGGT ACGTTTGAAC TATAAACCCT TTGTCCGTTG GTTGTGGTTT
GGATCGATTT TTATGATGAT TGGTGGTTTC TTCGCTGCAT CAGATAAGCG TTATCGCTCA
AAAGTGGCGG CGATTGTTAA GCCACAAGTA GATAAAGCTA AACTGGCAAC CGCTCAATAG
 
Protein sequence
MIPELGHFSL IIGVAFAFLL VSVPLIGVAR KDQYLVRYAW PLAYGMFFFI SLSVVSLGYS 
FAVDDFSVAY VAHHSNSQLP IFFKIAAVWG GHEGSLLFWV FSLATWAASV ALFSKGLEEV
FTARVLAVLA VIVIGFSLFM LLTSSPFERL FPMPAEGRDL NPMLQDVGLI FHPPMLYLGY
VGFSVSFAFA IAALMSGRLD SAWARWSRPW TLAAWVFLTG GISLGSWWAY YELGWGGWWF
WDPVENASFM PWLVGTALVH SLIVTEKRGA FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS
VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASEMSSPA RFELKSKETM LLICNVLLTV
ATGTVLLGTL YPLLIDALGM GKISVGPPYF NAVFVPIVLV LFAFMGVGPI IRWKKSKAGE
LRRQLLIPAL ISVAIGIVTP FIVDGAFNAW VAFGIAAAVW IILATARAAY NIVKPKEGDI
SVARMGRSQF GMILAHFGIA VSVIGATMVS NYSVEKSVRM GPGVSQELAG YTFKYLETKN
VVGPNYTAQQ GQIEIYKDDK LLTLLKPDRR QYNVRTMDMT EAGIDWGLFR DLYVTMGDPI
SATEFAVRLN YKPFVRWLWF GSIFMMIGGF FAASDKRYRS KVAAIVKPQV DKAKLATAQ