| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3707 |
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| Symbol | |
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| ID | 5079091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 4314635 |
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| End bp | 4316686 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640500914 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_001185214 |
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| Protein GI | 146294790 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000259618 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCTT CTGCTGCGAT CAAAATGCCA TTAATACTCT CAGGTTTAAT TAAGCCTGTT
ATTGGGATCG TATTCGTATT TGGCATATTG CCATCGAGTT TTGCTGCCAA TCGATTATTA
GATGTTAAAT ATCATGCTTT AGTTGATCGT CAGTTAGAGG TTGAGTTAGT TTTTGAAGAT
GCAGTAATGC CACCAGTCAT TGATTCTAAT GCATCGCCAG CCGAGTTGGT TTTAATATTC
GATAATAGTA TTTCTGGCTT ATCTAAAGAC CGCTTGCCAA TTAATCAAGT GGGTGTAAAT
GAAATAAGAA CAGAACAGCA GGATTCTCAA CTAAAAGTTG CCTTAGGCTT ATCTAAAGTG
AAGCCGTATC AAGGTGCTGT GATAGGTAAC TCTTACCGTT TAACGATCAA TGATGAAGTC
GCTAGTGCAA AGCCATTTAG TGAAAATCCT TTTGTTAACA GCATTAAAAA TATCGATTTT
CGCCGTAATG CAAATGGTGG TGGCGAATTA CTGGTCTATT TAAATAATCG CTCAGTCGCT
GCCAATGTTG AACAAATTGG CGCTAAGCTT GAGATAAAGT TATTTAATAC CGACATTAAT
AATGATCTGC TTTATGTGAT GGATGTGCAG GATTTTTCAA CACCAGTAAA AAGTTTTGAA
ACCTTCAAGG AAGATTTAAC TACGCGAATA TTAGTTGATA TTTCAGGTAA CTACGATTTC
AATTATAAAC AGGAAGATAA TATATTTAGA CTCTCAATAA ATAAAGTTGA GCGGGTTGCA
GCAACAAAAG AAGTAAAAAA ATACAACGGA AGAACCTTAT CCCTTAATTT CCAAAATATT
TCTGTTCGAA CAGTACTACA GATTATTGCT GATTATAATA ATTTCAATCT CGTGACCAGT
GATACTGTTG AGGGCAATAT TACCCTTAGA CTTGATGATG TACCTTGGGA TCAAGCATTA
GATTTAATAT TACAAACTAA GGGACTAGAT AAGCGTATTG AAGGTAACAT TTTAATGGTG
GCTCCAAGTG AGGAACTGGC CATCCGAGAG AGTCAAAACC TTAAGAATAA ACAAGAGGTT
AAAGAGTTAG CTCCTCTCTA TTCTGAATAT TTACAGATCA ATTATGCCAA AGCGATTGAT
ATAGCTGAAT TACTTAAGAG TGCGGATTCG AGTCTGCTAT CCCCACGGGG TTCAGTGGCC
GTAGATGAAC GGACAAATAC TGTACTTGTA AAAGATACCG CTGAAATCAT AGAAAATATT
CATCGTTTAG TGGAGGTGCT GGATATTCCG ATCCGCCAAG TGTTGATTGA GTCACGTATG
GTGACAGTTA AAGATAATGT GTCAGAAGAT TTAGGTATAC GCTGGGGCAT AACCGATCAG
CAAGGCAATA AAGGTTCATC AGGTTCCTTA GAAGGCGCTC AAGATATCGC CAATGGTATT
GTTCCTAGTA TTGGTGATCG ACTAAACGTC AATTTACCTG CACAAGTTGA TAGTGCGGCG
AGCATTGCAT TCCATGTTGC CAAATTAGCC GACGGTACTA TTTTAGATCT CGAGCTGAGT
GCGCTTGAGC AAGAAAATAA AGGCGAAATT ATTGCTAGTC CACGCATTAC GACTTCTAAT
CAAAAAGCGG CATACATTGA GCAGGGTATT GAAATCCCGT ATGTGCAATC AACCTCAAGT
GGTGCCACAT CCGTCACCTT TAAAAAAGCC GTGTTATCAT TGCGTGTGAC ACCGCAAATC
ACTCCTGATA ATCGAGTGAT TTTAGATTTA GAAATCACGC AAGATTCTGA AGGAAAAACG
GTTCCTACAT CCACAGGGCC TGCGGTTGCG ATTGATACTC AGCGTATCGG TACACAAGTG
TTGGTTAATA ATGGTGAAAC CATCGTGCTC GGTGGTATTT ACCAACAGAA TCTTATCAGT
CGCGTTAGCA AAGTGCCTGT TTTAGGCGAT ATTCCCCTAG TAGGTTTTTT GTTTAGAAAC
ACAACAGATA AAAATGAGCG TCAAGAGCTA CTGATTTTTG TGACACCTAA AATTGTGGAT
GAAAAGCTCT AA
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| Protein sequence | MKSSAAIKMP LILSGLIKPV IGIVFVFGIL PSSFAANRLL DVKYHALVDR QLEVELVFED
AVMPPVIDSN ASPAELVLIF DNSISGLSKD RLPINQVGVN EIRTEQQDSQ LKVALGLSKV
KPYQGAVIGN SYRLTINDEV ASAKPFSENP FVNSIKNIDF RRNANGGGEL LVYLNNRSVA
ANVEQIGAKL EIKLFNTDIN NDLLYVMDVQ DFSTPVKSFE TFKEDLTTRI LVDISGNYDF
NYKQEDNIFR LSINKVERVA ATKEVKKYNG RTLSLNFQNI SVRTVLQIIA DYNNFNLVTS
DTVEGNITLR LDDVPWDQAL DLILQTKGLD KRIEGNILMV APSEELAIRE SQNLKNKQEV
KELAPLYSEY LQINYAKAID IAELLKSADS SLLSPRGSVA VDERTNTVLV KDTAEIIENI
HRLVEVLDIP IRQVLIESRM VTVKDNVSED LGIRWGITDQ QGNKGSSGSL EGAQDIANGI
VPSIGDRLNV NLPAQVDSAA SIAFHVAKLA DGTILDLELS ALEQENKGEI IASPRITTSN
QKAAYIEQGI EIPYVQSTSS GATSVTFKKA VLSLRVTPQI TPDNRVILDL EITQDSEGKT
VPTSTGPAVA IDTQRIGTQV LVNNGETIVL GGIYQQNLIS RVSKVPVLGD IPLVGFLFRN
TTDKNERQEL LIFVTPKIVD EKL
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