| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3648 |
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| Symbol | |
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| ID | 5078938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 4253654 |
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| End bp | 4258189 |
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| Gene Length | 4536 bp |
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| Protein Length | 1511 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640500854 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001185155 |
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| Protein GI | 146294731 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAAAGG TTTTTATAGG GGTAAATTTG CGTCCATTCA CCTACAAACT TGTTATATGC
ACTCTTTATA TTTTGAGTTT ATTGTGGATC CCACAAAATG GATGGGCACA GCCATTAAGT
GCGGCGAATA CTCAACTTAA ATTTGAACAT ATTCGCAGTG AAGAAGGGCT AAACCAAAAT
ACTATCACGA GTCTATTTAT GGACAGTGCT GGCATGCTCT GGATTGGTAC TCAAGATGGT
TTACACAGCT ACAATGGCCA TAGTTTTAAT CTTTTTATTC ACTCACCGAA TGATCCTACC
AGCATTTCCG AAAGTTATGT GTCCGATATT ATCCAAGATC CTGAAGGATA TATTTGGGTG
GGCACCTTTA GCCAAGGTGT TAATCGTCTC GACCTCAGCA CAGGGAAATT CGAGCATTTT
GGGTTAGAAC AAGGACTGAC AGAACCGAGA GTCACTAAGC TTAATATTGT TGGCAATACC
CTATGGATTG GCACTCAATC AGGCTTATTT TCCTTATCAA CAAAGACTCA ACGTATTAAT
CAAGTCAACT TAGGTAACAG TGTTGAACCC TATATCACTA GCCTTGCCAA TGTTGACAAC
ACCTACTTAT TGGCTGGTAC ACAAAATAGC GGGACCTTTG CTGTAAGTGC CAACACCATC
ACCCGTTTAA ATGTGCCGCA GAATGTGACT GCCTATCAAA TAAAAGCCAA TTCTAAACGC
TCAATTGATC TCGCCCTTGG TAACCAACTT TGGCGTTATG ACCTTATCTC CCAGCAGGGT
GAAGTATTAT GGCAAGTCGA TCCTGATATT CCTTACATTA AAGATTTTAT TCAAACACCA
CTTGGGGTTA TTTGGGCTGT AGGGCCAGAA GCCGGGCTGA TCCAATTAGA TCGTGAGGCA
GGGCAGCTTA TCGCGACATA TCATAAATAC GATACTAAGC GTACAAACAG CATCAGTGAA
AATAATATTT TAAGCCTACT GCAAGATCCT TTCGGCAACC TCTGGCTCGG CACCAGTTAC
TCAGGACTTA ATAAAATCAA TACTCGCCGT CAGTTTTTTC AGCATCTCTA TGAGTCGACT
ATCGAACTGC CACAGCAAAG CAACAATATT CGCTCACTGC TACGCAGCAA AGACGGTGCA
TTATGGATAG GAACAGACGG TGCAGGACTA AAACGCTTAC CCCAAGGCAG TAACCAATAT
GATTATTATT CGTCATATTT TGCTAAAGCG CTCGGTTCCA GCCAGCGCCA CTTAAATCTA
GTTATTCGAG ATATTGCCCA AGATAATCAA GACATCCTTT GGATTGCCAG TAACTATGGA
CTCGGACGTT TAACACCCAG TGGTGAGTTT TCGCTGCTTA AAGTGACTCA AAATCAAGAG
CACTCGGAAC CAAACTATAT CCGCAGTTTA GAAATTGATC ACCAAGATAG ACTTTGGATT
GCCACTAGCC ATGCACTTTA CCGCAAAGCG CTAGATAAGG ATGAATTCAT CCCCGTATCC
CTAGCGAATA TCGAGAATTT TTATCCCACA CAAAACTTAT TATTAACCCT TAAAGCCGAT
AAATATGATC TTTGGATAGG CTCGCTCAAT GGACTTATCA AGCTAGATAT GAAAACTGAA
TTAGGTCAGG TTTTTTACCA CCAACCTAAT CATAAAAACA GTATTATTAA TAACCGTATT
CGGGATATTT TAGTCGCATC CAATGGGGAT ATTTGGTTTG CAACCCATGG TGGTATAAGT
AAATGGTCTT CTACCAATGC AGATGTCGGT TTTAGCCATT ACACCCGCGA ACAGGGCTTA
CCCAGTAACA CTATTTATGC GCTGCTCGAA GATCAAAACC ATCACATTTG GTTTAGCAGT
AATGCAGGCA TTGGTAAATT AAACCCTGTA ACTCACCGCA TTATCAGTTT CAATGAACAG
GAGGGATTGC AGTCGCTAGA GTTTAATGGC GCAGTAAAAC TTAAAGATAG CGATGGTGAC
CTTTGGTTTG GTGGCATTAA TGGTATTAAT CGTTTTAACC CTCAAACTAT TCCCGAGCAA
AGAGGTGAAG CCAAAGTTGC ATTAACAGGC TACAAGATTG CGGGGAAGCA TCACACTATT
TTAGATTTAA GTCGCCCACC GCCGATTGTG ATGAATTACG GCGAACAATT AGTGAGTTTT
GAAGTGACCT CATTAGATTT TAGTTATACG GGGAAAAACC GTTTTAGCTA TTTCCTTGAA
GGCTTTGATC ACCAGTGGCA TCAATTACCC GCGGGTAATG AGATTACATT TACCAATATT
AATCCCGGTC AATATGTGCT TCATGTACGC CACTCATTGC AATATAACCG TGAAGGCTCA
CAAACCCTTT TAGTGAATCT AAAGGTACAA GCTCCCTTCT ATAGAACCCC ATTCGCCTAC
ACCCTTTATT GCTTACTCGC TATAGGATTA TTGATTTGGG GACTTCATTG GCGTAAACAA
AAACGCCAAC AACAACGGGA GTTTGAAACC AGTATCCGAG CCTCTGAAGA AAGGCTCAAG
CTCGCGCTAT GGGCATCAGG CGATGGGATG TGGGACTGGA ATATTAAAGA AAATAAAGTA
TATCGAACCA ATATGGATGC ATCTGTCTCA CATTGGAGTA GCCACAATCT GCTGCATGAG
AATATGCACC CTGAAGATAG GGAAAAATTT AAGTATGAAT TGGCCGAACA CCTACAGGGC
CGAACCCCTT TCTTCGAAAT CGAGTATCGG ATTGAAGGTG CTTTTGGTAA ATGGATTTGG
ATTTTGGACC GAGGTAAAGT CGTTGAAACT GACGCACATA TGCAACCCAT GCGTATGACG
GGGACTAACC GCAATATAAC CTCCCGTAAG CTGATTGAAA ATGAACTGGT ACTTTCATCC
CAAGTGCTTA ACAGCATGAA TGAAGCCGTT GTCGTGGCTG GGTTAGATTA TAAAATCCGC
TCGGTGAATC CAGCATTTAG TGCTATTACA GGATATTCTG AACGTCAAAT CACCGATAAA
TATTTAGTTC ATCTGGCCTA TAAACAACAA CGCGAACTCT TCAATAGCAT CGAGCAACAG
TTACTTCGCC ATAAACATTG GGTAGGCGAA ATTTGGATCC GCAATAAACA ACGCAAAGCC
ATATTGGTTT GGCTTGAGAT CAACCAAGTT ATCGATATAA AAGGTGAAAC TAGCCACTTT
GTTGCGGTAT TTACCGACAT TACAGAGCGA AAGAAAGCCG AGCAGGATCT GCGCTTCCTT
GCCAGTTTTG ATACTTTGAC GGGATTGCCA AACAGAACCC TCTTCCAAGA CAGGCTCAAT
CACGCAATCA CCCAAGCACA TAGGGCAAAT AATATCGTTG CACTGCTGTT CCTCGATCTC
GATCGTTTTA AGCATATTAA CGATTCTATG GGCCATCATG TGGGGGACTT ATTGCTCAAA
GCCGCGGCTA AGCGCCTGCA AAATGCCGTG CGAGAAGGCG ATACGGTTGC CCGTCTGGGT
GGCGATGAAT TCACCATTAT TTTGGAAGGT GTAGCCAAAA CCAAAGCCGC GACACTGATT
TCGGAAAAAG TGCTACGCGC CTTCCAAACA CCGTTTTTAT TAGAGGATAA GTCCTTAACT
ATCTCAACCT CGATAGGAAT TAGTCTCTAT CCCAATGATG CCGACAATGC GGACTCATTA
ATTAAATTTG CCGATACGGC CATGTATCAT GCTAAGTCTT TAGGTCGAAA TAATTTTCAG
TTTTACACCC ATAAACTTAA TGAAATCGCG ACTCGCCATG TGCTATTGGA AGCTGGATTA
AAACAAGCCA TTCACCGCAA TGAGCTAAGT TTAGTCTACC AACCTAAGTT CAGTTTACGG
GATGGCTCAC TCACAGGGCT AGAAGCCCTA TTACGTTGGC ACCATACTGA ACTGGGCCCG
ATTTCACCCG TAGAATTTAT CCCGCTAGCG GAAGAAACAG GAATTATTAA TCAAATTGGA
CATTGGGTGA TTAACCATGC CTGCCAACAA CTGGCTGAGT GGAATGCATT AGGTTTCAAT
AACATTAGCA TGGCGGTTAA TTTATCGGCT CGACAACTCA AAGCCGATAT CATTTCCACC
ATTGAAGTCG CCCTCGCCGT CTCTGGACTT CCCGCTCAAT CACTAGAGCT TGAACTGACC
GAATCGATGA TCATGGGTAA CCCCCAAGAT TCTGTCAGTA TTTTATCTAA ACTCAAGGCG
CTGGGATTAA CTATCGCGAT TGATGATTTT GGGACTGGAT ATTCAAGCCT AAGCTATCTA
AAACGCTTCC CGATAGACAC GTTAAAAATT GATCGAGAAT TTGTCAGAGA CATTACCAAC
GATCCCGACG ATGCAGCGAT CACCAGTGCC ATTATTGCCC TCGCTCACAG CTTAGAACTG
AATGTCGTCG CCGAAGGCGT AGAAACCCAA GCACAGCTAA ACTTTTTAGG GCTACAGGGT
TGCGATGAGG TACAAGGTTT CCTCCTCAGT AAACCTCTCA GTGCTAAAGA CTGCTTAACA
TTATTAGGTA ATCAATCTAA ACAACTGATG CAATAA
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| Protein sequence | MIKVFIGVNL RPFTYKLVIC TLYILSLLWI PQNGWAQPLS AANTQLKFEH IRSEEGLNQN
TITSLFMDSA GMLWIGTQDG LHSYNGHSFN LFIHSPNDPT SISESYVSDI IQDPEGYIWV
GTFSQGVNRL DLSTGKFEHF GLEQGLTEPR VTKLNIVGNT LWIGTQSGLF SLSTKTQRIN
QVNLGNSVEP YITSLANVDN TYLLAGTQNS GTFAVSANTI TRLNVPQNVT AYQIKANSKR
SIDLALGNQL WRYDLISQQG EVLWQVDPDI PYIKDFIQTP LGVIWAVGPE AGLIQLDREA
GQLIATYHKY DTKRTNSISE NNILSLLQDP FGNLWLGTSY SGLNKINTRR QFFQHLYEST
IELPQQSNNI RSLLRSKDGA LWIGTDGAGL KRLPQGSNQY DYYSSYFAKA LGSSQRHLNL
VIRDIAQDNQ DILWIASNYG LGRLTPSGEF SLLKVTQNQE HSEPNYIRSL EIDHQDRLWI
ATSHALYRKA LDKDEFIPVS LANIENFYPT QNLLLTLKAD KYDLWIGSLN GLIKLDMKTE
LGQVFYHQPN HKNSIINNRI RDILVASNGD IWFATHGGIS KWSSTNADVG FSHYTREQGL
PSNTIYALLE DQNHHIWFSS NAGIGKLNPV THRIISFNEQ EGLQSLEFNG AVKLKDSDGD
LWFGGINGIN RFNPQTIPEQ RGEAKVALTG YKIAGKHHTI LDLSRPPPIV MNYGEQLVSF
EVTSLDFSYT GKNRFSYFLE GFDHQWHQLP AGNEITFTNI NPGQYVLHVR HSLQYNREGS
QTLLVNLKVQ APFYRTPFAY TLYCLLAIGL LIWGLHWRKQ KRQQQREFET SIRASEERLK
LALWASGDGM WDWNIKENKV YRTNMDASVS HWSSHNLLHE NMHPEDREKF KYELAEHLQG
RTPFFEIEYR IEGAFGKWIW ILDRGKVVET DAHMQPMRMT GTNRNITSRK LIENELVLSS
QVLNSMNEAV VVAGLDYKIR SVNPAFSAIT GYSERQITDK YLVHLAYKQQ RELFNSIEQQ
LLRHKHWVGE IWIRNKQRKA ILVWLEINQV IDIKGETSHF VAVFTDITER KKAEQDLRFL
ASFDTLTGLP NRTLFQDRLN HAITQAHRAN NIVALLFLDL DRFKHINDSM GHHVGDLLLK
AAAKRLQNAV REGDTVARLG GDEFTIILEG VAKTKAATLI SEKVLRAFQT PFLLEDKSLT
ISTSIGISLY PNDADNADSL IKFADTAMYH AKSLGRNNFQ FYTHKLNEIA TRHVLLEAGL
KQAIHRNELS LVYQPKFSLR DGSLTGLEAL LRWHHTELGP ISPVEFIPLA EETGIINQIG
HWVINHACQQ LAEWNALGFN NISMAVNLSA RQLKADIIST IEVALAVSGL PAQSLELELT
ESMIMGNPQD SVSILSKLKA LGLTIAIDDF GTGYSSLSYL KRFPIDTLKI DREFVRDITN
DPDDAAITSA IIALAHSLEL NVVAEGVETQ AQLNFLGLQG CDEVQGFLLS KPLSAKDCLT
LLGNQSKQLM Q
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