Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_3644 |
Symbol | prpB |
ID | 5078934 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 4247262 |
End bp | 4248140 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640500850 |
Product | 2-methylisocitrate lyase |
Protein accession | YP_001185151 |
Protein GI | 146294727 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2513] PEP phosphonomutase and related enzymes |
TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCAAA GCGCAGGATT ACGTTTTCGC CAAGCTCTTG CTAAGGCCAA ACCGTTACAA ATCGTTGGCA CCACCAATGC CTATTTTGCC TTAATGGCAG AGCAAACTGG CTTCCAAGCC TTGTATCTTT CGGGCGCTGG CGTTGCCAAT GCTTCCTACG GTTTGCCTGA CTTGGGCATG ACCTCAATGA ATGACGTGCT GATTGATGCC GGCCGCATCA CCTCTGCCAC GCAGGTGCCT TTATTGGTCG ATATCGATAC TGGCTGGGGC GGCGCATTCA ATATTGCTCG TACCATCAAA GAATTCGAAA AAATCGGCGT CGCTGCAGTG CACATGGAAG ACCAAGTGTC GCAAAAGCGT TGCGGCCACA GACCCAACAA AGCAGTTGTG AGCATTGAAG AAATGGTCGA TCGCATTAAA GCGGCCGTCG ATGCCCGTAC CGATCCTAAC TTTGTGATCA TGGCGCGTAC CGATGCGGTT GCCGTGGAAG GTTTAGAAGC GGGTATTGAA CGTGCGCAAG CGTATATTGC CGCCGGCGCC GACATGATCT TCGCCGAAGC CTTAACTGAG CTAGACCAAT ATCGCCACTT CAAGGCTCAA GTTAAAGCAC CAATTTTGGC CAACATGACT GAATTTGGTC AAACCCAATT GTTCAATAAA GAAGAACTCG CCGAGGCGGG TGCCGACATG GTGCTCTACC CACTCGGTAC TTTCCGTGCA GCCAACCAAG CCGCACTGAA CGTCATGCAA GCGCTGATGA ATGATGGTCA TCAACGCAAT GTGCTAGACA CTATGCAAAC CCGTAAAGAC TTGTATAAAT ACTTGGGCTA CCACGCCTTT GAAGACAAGT TAGATCAACT GTTCAGCCAA GATAAATAA
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Protein sequence | MTQSAGLRFR QALAKAKPLQ IVGTTNAYFA LMAEQTGFQA LYLSGAGVAN ASYGLPDLGM TSMNDVLIDA GRITSATQVP LLVDIDTGWG GAFNIARTIK EFEKIGVAAV HMEDQVSQKR CGHRPNKAVV SIEEMVDRIK AAVDARTDPN FVIMARTDAV AVEGLEAGIE RAQAYIAAGA DMIFAEALTE LDQYRHFKAQ VKAPILANMT EFGQTQLFNK EELAEAGADM VLYPLGTFRA ANQAALNVMQ ALMNDGHQRN VLDTMQTRKD LYKYLGYHAF EDKLDQLFSQ DK
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