| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3643 |
|---|
| Symbol | |
|---|
| ID | 5078933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 4246442 |
|---|
| End bp | 4247209 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640500849 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001185150 |
|---|
| Protein GI | 146294726 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1802] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAGC AAGACACGAC GTTCGTTTCT GATGACACAC ATGTTTCCCA CCTGCATAAA
GTCAAATCGA CCTCGGCAGA TAAAACGTCG ACCACATTAG CCGATCAAAT TTTGGTGCAG
ATCCAAACCA GCATCATCAA GGGCGAACTG CCTGCGGGCA GCAAGATTAA CGAGCAAGCA
CTGGCCGAAA AATACGGCAT CAGCCGCGGC CCGACCCGCG AAGCCCTGCA AACCTTAGAA
AGACAACGCT TAGTAGTGCG TGCGCCCCAT GTTGGTGCCC GCGTCGCCCA ACTGACGGTG
AGTGAACTTA ACGATTTATA TCAACTACGT AGCGTACTTG AAGGCATGGC CTGCGAACTC
GCCGCCAGCC GTATTACCCC AGAACAATTA GCCAAGCTAG AAGATCTGCT CGCAACGCAA
GAAGCGGCGC TCGCCAAGGG CGATACTTAC TTCCAAGAAG AAGGCGATGT CGACTTCCAC
TACCAAATTA TTCAAGCCAG CGGCAACAAG CATCTGCAGG AAACCTTGGT CGGCGGTCTG
TATCACTTGC TACGGATGTA CCGCTACCAG TGCACCAATA AAAATCGCCC CGTGAAAGCG
ATTGCCGAAC ACAGACGCAT AGTCGAAGCC ATTGCCCAGC GCGATGGTGA GTTGGCCAGT
TTGCTGATGC GCCGCCATAT CGAACAGGGG CGTAAAAATA CCGAATTACG CTTAATTGAA
TTGCAAGCCA ATGCAGCCGC AAAAGAAACC TTAGCCAACA TTAGCTAA
|
|---|
| Protein sequence | MLKQDTTFVS DDTHVSHLHK VKSTSADKTS TTLADQILVQ IQTSIIKGEL PAGSKINEQA
LAEKYGISRG PTREALQTLE RQRLVVRAPH VGARVAQLTV SELNDLYQLR SVLEGMACEL
AASRITPEQL AKLEDLLATQ EAALAKGDTY FQEEGDVDFH YQIIQASGNK HLQETLVGGL
YHLLRMYRYQ CTNKNRPVKA IAEHRRIVEA IAQRDGELAS LLMRRHIEQG RKNTELRLIE
LQANAAAKET LANIS
|
|---|
| |