| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3611 |
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| Symbol | |
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| ID | 5078901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 4207585 |
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| End bp | 4209195 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640500817 |
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| Product | threonine dehydratase |
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| Protein accession | YP_001185118 |
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| Protein GI | 146294694 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form
[TIGR01127] threonine dehydratase, medium form |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTACTG CATCTATGTT GCCACTTGCA TCGCAAACTC AGGCGGATCT AGCCCATTTT
CAGTTGGCAC AAAGCTATCT GCAAAAAATC CTGTTGTCAT CCGTGTATGA CATAGCGAAG
GTGACGCCGC TTTCAAGCAT GAACAAGTTG TCGGCGCGTT TAGGTTGTCA GGTATTTTTG
AAGCGCGAAG ATATGCAGCC AGTGCATTCC TTCAAGTTAC GCGGTGCCTA TAACCGTATC
GCCCAACTGA CGAAAGAAGA ATGCCAGCGC GGCGTGGTGT GTGCTTCGGC AGGCAATCAT
GCTCAGGGTG TGGCGATGTC GGCAGCGAGT CGCGGTGTGG ATGCTGTGAT TGTGATGCCT
GAGACGACGC CCGATATCAA AATCGATGCG GTGCGCCGTT TAGGTGGCAA CGTGGTATTG
CACGGCCAAG CCTTCGATCA AGCCAATGGG TTTGCGATGG CGATGGCTAA AGAAGAGGGC
CGAGTCTATA TCGCGCCCTT CGACGATGAA GCCGTGATCG CAGGCCAAGG CACTATCGCC
CAAGAGATGT TGCAGCAGCA GCGCGATCTC GAAGTGGTAT TTGTGCCCGT AGGCGGTGGC
GGGCTCATCG CGGGTATCGC TGCCTATTAC AAGGCGGTGA TGCCGCAGGT GAAAATTGTC
GGCGTCGAGC CAGAAGACGC GGCCTGTTTA AAGGCGGCGA TGGAAGCGGG CGAGCCAGTG
ACGCTGGCGC AAGTCGGTTT ATTTGCCGAT GGCGTGGCGG TGAAGCGTAT CGGCACTGAG
CCGTTTCGGG TCGCGAAACT CTATGTCGAT GAAGTGGTGA CCGTCACCTC GGATGAAATC
TGCGCTGCGG TAAAAGATAT CTTCGAAGAC ACCCGAGCGA TCGCCGAACC CGCAGGGGCC
TTGTCCTTGG CTGGGCTTAA AAAATACGTC AGCACCAATG CCAGTGGTGA TTGTGGCAAT
GGTGAAAAAG TCGCCGCGAT TCTCAGTGGC GCGAATGTGA ATTTCCACAG TCTGCGTTAT
GTGTCCGAAC GCTGCGAACT CGGTGAGCAA AAAGAAGCGG TACTGGCGGT GAAAGTCCCT
GAACGTCCGG GAAGTTTCTT AAAATTCTGT GAGCTGCTCG ATAAGCGGGT GATGACGGAG
TTTAACTATC GTTTCAGTAG TCGCGATCTT GCCGTGGTGT TTGCCGGCAT TCGCTTAAGC
CGAGGCCAAG GCGAGTTAGA ACAAATCATT GCTACCTTAG AGGCCAATGG CTTCGAAGTG
CAGGATTTAT CTGGCGATGA AACTGCGAAA TTGCATGTGC GTTATATGGT TGGCGGTCAT
CCACCAGAGC CTTTAGAGGA GCGTTTATTT AGCTTTGAGT TCCCTGAACA TCCCGGTGCG
CTGCTGAAGT TTTTGACCAC CTTGCAGAGT AAATGGAACA TTAGCTTGTT CCATTATCGC
AACCACGGCG CGGCTTTTGG CCGAGTGCTG GCGGGGTTTG AAGTGCCCGC GAGTGATGCC
TTGCCGTTCC AACAGTTTTT AACTGAACTG GGTTTTGTCT ATCAAGAGGA GACCCAAAGT
CCTGCCTATC AGCTGTTTTT AAATGCGGGT AACGGCAACA AGGCGTTATA A
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| Protein sequence | MFTASMLPLA SQTQADLAHF QLAQSYLQKI LLSSVYDIAK VTPLSSMNKL SARLGCQVFL
KREDMQPVHS FKLRGAYNRI AQLTKEECQR GVVCASAGNH AQGVAMSAAS RGVDAVIVMP
ETTPDIKIDA VRRLGGNVVL HGQAFDQANG FAMAMAKEEG RVYIAPFDDE AVIAGQGTIA
QEMLQQQRDL EVVFVPVGGG GLIAGIAAYY KAVMPQVKIV GVEPEDAACL KAAMEAGEPV
TLAQVGLFAD GVAVKRIGTE PFRVAKLYVD EVVTVTSDEI CAAVKDIFED TRAIAEPAGA
LSLAGLKKYV STNASGDCGN GEKVAAILSG ANVNFHSLRY VSERCELGEQ KEAVLAVKVP
ERPGSFLKFC ELLDKRVMTE FNYRFSSRDL AVVFAGIRLS RGQGELEQII ATLEANGFEV
QDLSGDETAK LHVRYMVGGH PPEPLEERLF SFEFPEHPGA LLKFLTTLQS KWNISLFHYR
NHGAAFGRVL AGFEVPASDA LPFQQFLTEL GFVYQEETQS PAYQLFLNAG NGNKAL
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