| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3598 |
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| Symbol | |
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| ID | 5078838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 4191716 |
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| End bp | 4194349 |
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| Gene Length | 2634 bp |
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| Protein Length | 877 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640500804 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_001185105 |
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| Protein GI | 146294681 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTAAGG ATGAAGATGA AACTACGCAA TCGTCGACTC TTAGGGTTGA ACGCTTAAAA
AAAAGAATTA TCCGCTTAAA ATATTTAGCG CATAAGTATA AGCGTGCCGA AATCATCCAG
AATGCCCTAC TTGAGTTATC GAATATCGCG ACTCAAGTTT CCTCATTAGA AGAATTCTAT
GTAGGTGTAC ATCAACACTT AAAACAACTG ATCTCCGCTG ACAACTTTTT TATCGCTACT
CTCGATGTCG CTTCAGGCAC AATCGCTGTT CCTTTTTTTG CCGATGAAAA AGATGCTCAT
CCCGCACAAC TTTATCCAGA GGAATCACTC TCTACTTTAT TGCAGCAGGG ATTAACAGGG
TACGTATTCA GAACGGGTAG AGCACTCCTG TGTGACAATG ATAAAGTTGA TGAGCTCATC
GCGGCAGGTG AGATAGTGAA CCTAGGTTCA CCCTGCCACC TATGGCTCGG AGTGCCCATT
AAACACGATG GTATAATGAC TGGTGTATTA GTCGTGCAAA CCTATGATAA AAATGTAAAT
TATGGTGATA TTGAAGTCGA ATTAATGACG TTTATTTGCC ACCATATTGC CGGCGTAATG
GAAAGGCTTA AACATCAAGA ACAGTTAGAG CAAGCGATAC AACAGCGCAC CAAAGAACTT
AGCCAAGCCT ACGATAAACT CAAGCAAGAA GTATATGAAA GGCGCAGAGC TGAACGTCTA
CAAAAATCGT TGTTTGAAAT AGCAGAACTT GCCAGTTCTG GCACGGACAA CCCTGACTTT
TACTCTCAAC TACATAATGT TATTCGCCAT TTAATACCCG CGAATAACTG CTATATTGCC
TTACTCAATG AAGAAGAAAC CCATCTCACC TTCCCTTTTT ATGTATCACA ACTAGGTAAT
AAGCATCCAG GAACTCGTCC ACTACAAGAT GGACTCACTG AATATGTGCT CAAACATAAA
CGCCCACTAT TACTAGACCA AAATGATATT AATACCCTGA TCACCAGTGG CGAGATCTAT
ACCAAAGCAC CCTCGTTAAA CCACACACAG ACGATGCATC AATGGATAGG TATTCCACTC
TTTATCCATG ATCAAGTCCG TGGCGCGCTA ACCATTTATA GCTTTAGCAT GACGCAGAAT
TATCAAATTA AGGATTTAGA GCTATTAACT TTCGTCTCAC AACATATTGG TGCGGCGATT
GAGAAAAAGC TTTCAGCAGA ATCACTCCGT CGCAGTTATG AAGAACTTGA AGAAAAAGTC
ATCGCCAGAA CAAAAGATTT AGCCGAGCTG AATAAAGACC TTGAGAAAGA GATCCTCCAA
CGTCGTAGTA TGGAAGCAAA ATTAGTTCAC GATGCAAAGC ACGATGCGCT TACGGGCCTC
CCTAATCGTG CCATGTTTAT GGAACGCTTA AATCAAGCAA TCAAGCATGT TAGGCGCCAC
AGCCTCGAAC AGTTTGCCTT ATTGTTTATC GATCTCGACC GCTTTAAACA GATAAACGAC
ACTCTTGGCC ATCTTGAAGG CGACCGATTC TTAATCGAAA CCGCAAGTCG CCTGAGATCC
TGTATTCGCG ATAACGATAC CTTAGCCAGA CTCGGTGGTG ACGAGTTTGT TATTCTACTC
GATAGCATTA ACAGTATTAA TGATGCCAAA GATATATCCG AACGAGTCAT CCAAACCATT
TCTCAATCTT ACAAACTAGG CTCAGTAGAA TTTAACTCTG GTGCCAGTAT TGGCATAACT
GTCAGTGGTA ATCATAAATT CGATACCAGT GAATCTATGT TGCGCAATGC AGATATGGCT
ATGTATCAAG CAAAAGCAAA TGGCAAAGGT TGCTATGTTA TTTTTGACGA TAGTTCGTCA
CAACAAGCTA TGCAAGATGC GGCATTTGAA AATGACTTTA GACGAGCATT GCAGCAATCT
GAGCTACAAC TGAATTATCT CCCTATTGTG GACTTAAATA CTCAAGAAGT TTATGCATTA
GAAAGCCGCC TATTTTGGGA ACATCCCCTA CGAGGTACGG TACAACAGGA GCAGCTTAAT
GCCCTTGCTG AGCAAACGAA TCTTATTGTA GAGCTAGATA AATACACCTT AGCAGCCGTG
AATCGAACCT ATCCACAATT ACTTAGAAGC TATGGAGATA AACTTAATCT GCATGTGATG
CTATCTAGCC AACATATAAA GCATAAGCAT GTACTTCGTA GTCTAAAAAA TGTTCTCAAG
CAAACTCAAC TTAATCTAAG TCGTTTATGG TTATTCTTTA GTGAAAAGGC ATTAGTTCAG
GAAACTGAAA ACCATATTAA TGGTTTTGAA CTACTTGATA AACTTGGCGT TAATCTTGGA
ATAAGCCACT ATGGCAGTGG TCATAGCGCA CTAAACAACC TGCTATTTTT ACCCATAAAA
GGGTTAAAAC TCGATGCCAA TATCACCCAA CAGCTAGTGG ATGAACAACA CATTAAGTTG
ATATCTGCCT ATCAAAAAGC GGCGTCAACA TTAGGATTAC AAACCTTTGT AGATGGGATT
AAAAGCCAAG AACAAATCCG TATATTTAGC TCATTGGGTT ATCAGTTTGG CCAAGGAATA
GCCTTAGCTG AAACCTTTTC GCTGGCGGAT AATCAGCAAC AAGATTGTGC TTAA
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| Protein sequence | MFKDEDETTQ SSTLRVERLK KRIIRLKYLA HKYKRAEIIQ NALLELSNIA TQVSSLEEFY
VGVHQHLKQL ISADNFFIAT LDVASGTIAV PFFADEKDAH PAQLYPEESL STLLQQGLTG
YVFRTGRALL CDNDKVDELI AAGEIVNLGS PCHLWLGVPI KHDGIMTGVL VVQTYDKNVN
YGDIEVELMT FICHHIAGVM ERLKHQEQLE QAIQQRTKEL SQAYDKLKQE VYERRRAERL
QKSLFEIAEL ASSGTDNPDF YSQLHNVIRH LIPANNCYIA LLNEEETHLT FPFYVSQLGN
KHPGTRPLQD GLTEYVLKHK RPLLLDQNDI NTLITSGEIY TKAPSLNHTQ TMHQWIGIPL
FIHDQVRGAL TIYSFSMTQN YQIKDLELLT FVSQHIGAAI EKKLSAESLR RSYEELEEKV
IARTKDLAEL NKDLEKEILQ RRSMEAKLVH DAKHDALTGL PNRAMFMERL NQAIKHVRRH
SLEQFALLFI DLDRFKQIND TLGHLEGDRF LIETASRLRS CIRDNDTLAR LGGDEFVILL
DSINSINDAK DISERVIQTI SQSYKLGSVE FNSGASIGIT VSGNHKFDTS ESMLRNADMA
MYQAKANGKG CYVIFDDSSS QQAMQDAAFE NDFRRALQQS ELQLNYLPIV DLNTQEVYAL
ESRLFWEHPL RGTVQQEQLN ALAEQTNLIV ELDKYTLAAV NRTYPQLLRS YGDKLNLHVM
LSSQHIKHKH VLRSLKNVLK QTQLNLSRLW LFFSEKALVQ ETENHINGFE LLDKLGVNLG
ISHYGSGHSA LNNLLFLPIK GLKLDANITQ QLVDEQHIKL ISAYQKAAST LGLQTFVDGI
KSQEQIRIFS SLGYQFGQGI ALAETFSLAD NQQQDCA
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