| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3568 |
|---|
| Symbol | |
|---|
| ID | 5078804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 4147441 |
|---|
| End bp | 4148367 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640500771 |
|---|
| Product | general secretion pathway protein C |
|---|
| Protein accession | YP_001185076 |
|---|
| Protein GI | 146294652 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3031] Type II secretory pathway, component PulC |
|---|
| TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00690915 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTAT TAGATAAAGT TATCGCAAAA GCTGCCAGCA TTCCTCATAA GCCCTTAAGT
CAGGTTACGT TCTGGTTTGG GTTTATTGTC AGTTTGTTAT TAGCGGCACA AATTACTTGG
AAGCTCGTAC CTACTCGCTC ATCACCCAGT GCGTGGTCAC CGACGGCCAC CACGGTAGGC
AGTGGTGCGG GCCAAATCGA CCTTACGGGT TTACAGCAAC TTGGACTGTT TGGTAAAGCT
GACGCTCAGT CCGAAAGACC TAAGGTTGAA GTGGTAGAAG CCATCACCGA TGCCCCTAAA
ACAAGCCTAT CTATCCTATT GACGGGGGTG GTTGCTTCAA CGGCAGATCA AAAAGGGCTC
GCGATTATTG AGTCCAGTGG CATTCAAGAA ACCTACAGCC TTGGGGACAA GATTAAAGGC
ACTTCTGCTT CACTCAAGGA AGTGTATGCC GACCGTATCA TCATCACTAA CGCGGGGCGT
TACGAAACAT TAATGCTTGA CGGGCTAGTG TATACAAGCC AAAGCGCAGT TAATCAGCAG
TTACAGCAAG CCAAAACAAG CAAAGTAGAG CAAACTGTCA GCCGTGTTGA TCAACGCCAA
AATGCTGAAA TCTCCCAAGA ACTGGCCGAG TCGCGTAATG AGTTATTAGC CGACCCCAGC
AAAATCACCG ATTACATTGC CATCTCACCC GTAAGACAAG GGGACGCGGT TGTGGGTTAT
CGTCTAAATC CCGGTAAAGA TGTCAATTTG TTTAGGCAGG CAGGGTTTAA AGCGAATGAC
TTAGCGAAAT CGATAAATGG GTACGACCTG ACTGTGATGA CTCAGGCGTT AGAAATGATG
AGCCAATTAC CTGAATTAAC TGAAGTTTCC ATTATGGTTG AGCGGGAAGG ACAGTTGGTT
GAAATCATGT TTAGTTTGCC GCAATAA
|
|---|
| Protein sequence | MDLLDKVIAK AASIPHKPLS QVTFWFGFIV SLLLAAQITW KLVPTRSSPS AWSPTATTVG
SGAGQIDLTG LQQLGLFGKA DAQSERPKVE VVEAITDAPK TSLSILLTGV VASTADQKGL
AIIESSGIQE TYSLGDKIKG TSASLKEVYA DRIIITNAGR YETLMLDGLV YTSQSAVNQQ
LQQAKTSKVE QTVSRVDQRQ NAEISQELAE SRNELLADPS KITDYIAISP VRQGDAVVGY
RLNPGKDVNL FRQAGFKAND LAKSINGYDL TVMTQALEMM SQLPELTEVS IMVEREGQLV
EIMFSLPQ
|
|---|
| |