Gene Sputcn32_3508 details

Gene Information

• Locus tag: Sputcn32_3508
• ID: 5078701
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella putrefaciens CN-32
• Kingdom: Bacteria
• Replicon accession: NC_009438
• Strand: +
• Start bp: 4081070
• End bp: 4081531
• Gene Length: 462 bp
• Protein Length: 153 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 640500711
• Product: RNP-1 like RNA-binding protein
• Protein accession: YP_001185016
• Protein GI: 146294592
• COG category: [R] General function prediction only
• COG ID: [COG0724] RNA-binding proteins (RRM domain)

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0000000482673
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAAAGT CATTTCTTAT TGTCTTGATT GTCGCCATTA TTGGCGCAGT AGCACTATCT 
CAGTTTGCAA CGCCATTATC AGCTATTGCT TTTGTCGCTG GCGCTATCAT TGCAAGTCTT 
GTTTTTAAAT TTGTTCCAGA GACTTCATCA TCTCATGCTT CAGAAGAACA ATATGTTGGC 
CCTACTATGA CCTTATATGT AGGTAACCTG CCTTATCGTG TTCATGAGGG TGAAGTAAAA 
GTATTATTTG GCGAATTTGG TCCAGTTAAC TCTGTACGTT TAGTCAGAGA TCGTAAGACA 
GGTCGTCGTA AAGGTTTTGG TTTTGTGGAG ATGTCAGAGT CTGGCGCACA AAAGGCCATG 
GTCAAATTGA ACGACTATAA TTTCCAAGAA AGAACCTTGA AGGTAAGAGA AGCTAAAACA 
CAGGATTCCG AAGGTACAGA GCGAACTGGT ACCGACGAGT AG 

 

Protein sequence

MQKSFLIVLI VAIIGAVALS QFATPLSAIA FVAGAIIASL VFKFVPETSS SHASEEQYVG 
PTMTLYVGNL PYRVHEGEVK VLFGEFGPVN SVRLVRDRKT GRRKGFGFVE MSESGAQKAM 
VKLNDYNFQE RTLKVREAKT QDSEGTERTG TDE